Table of Contents

Publication

Journal Papers / 期刊論文

  1. Sun, Y.-Y., Hsieh, C.-Y., Wen, J.-H., Tseng, T.-Y., Huang, J.-H., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2024) “scDrug+: predicting drug-responses using single-cell transcriptomics and molecular structure” Biomedicine & Pharmacotherapy 177:117070.
  2. Lee, S.-C., Huang, C.-H., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2024) “Macrophages as determinants and regulators of systemic sclerosis-related interstitial lung disease” Journal of Translational Medicine 22:600.
  3. Lin, H.-H., Chang, C.-W., Liao, Y.-T., Yeh, S.-D., Lin, H.-P., Ho, H.-M., Cheung, C. H.-Y., Juan, H.-F., Chen, Y.-R., Su, Y.-W., Chen, L.-M., Tan, T.-H., and Lin, W.-J.* (2024) “DUSP22 inhibits lung tumorigenesis by suppression of EGFR/c-Met signaling” Cell Death Discovery 10: 285.
  4. Wang, W.-H., Kao, Y.-C., Hsieh, C.-H., Tsai, S.-Y., Y. Cheung, C. H., Huang, H.-C.*, Juan, H.-F.* (2024) “Multiomics reveals induction of neuroblastoma SK-N-BE(2)C cell death by Mitochondrial Division Inhibitor 1 (Mdivi-1) through multiple effects” Journal of Proteome Research 23(1):301-315.
  5. Hsieh, C.-H., Huang, C.-T., Cheng, Y.-S., Hsu, C.-H., Hsu, W.-M., Chung, Y.-H., Liu, Y.-L. Yang, T.-S., Chien, C.-Y., Lee, Y.-S., Huang, H.-C.*, Juan, H.-F.* (2023) “Homoharringtonine as a PHGDH Inhibitor: unraveling metabolic dependencies and developing a potent therapeutic strategy for high-risk neuroblastoma” Biomedicine & Pharmacotherapy 166:115429.
  6. Kao, Y.-C., Chang, Y.-W., Lai, C. P., Chang, N.-W., Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* (2023) “Ectopic ATP synthase stimulates the secretion of extracellular vesicles in cancer cells” Communications Biology 6:642
  7. Chang, Y.-W., Yang, T.-T., Chen, M.-C., Liaw, Y.-G., Yin, C.-F., Huang, T.-Y., Hou, J.-T., Hung, Y.-H., Hsu CL, Huang, H.-C.*, Juan, H.-F.* (2023) “Spatial and temporal dynamics of ATP synthase from mitochondria toward the cell surface” Communications Biology 6:42.
  8. Juan, H.-F.* and Huang, H.-C.* (2023) “Quantitative analysis of high-throughput biological data” WIREs Computational Molecular Science (https://doi.org/10.1002/wcms.1658)
  9. Tu, Y.-H., Juan, H.-F.* and Huang, H.-C.* (2023) “Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts” Briefings in Bioinformatics 24(2):bbac633.
  10. Hsieh, C.-Y., Wen, J.-H., Lin, S.-M., Tseng, T.-Y., Huang, J.-H., Huang, H.-C.*, Juan, H.-F.* (2023) “scDrug: From single-cell RNA-seq to drug response prediction” Computational and Structural Biotechnology Journal 2:150-157.
  11. Chen, K.-P., Hsu, C.-L., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2023) “BIC: a database for the transcriptional landscape of bacteria in cancer” Nucleic Acids Research 51(D1):D1205-D1211.
  12. Hsu, C.-L.#, Yin, C.-F.#, Chang, Y.-W., Fan, Y.-C., Lin, S.-H., Wu, Y.-C., Huang, H.-C.*, Juan, H.-F.* (2022) “LncRNA SNHG1 regulates neuroblastoma cell fate via interactions with HDAC1/2” Cell Death & Disease 13:809.
  13. Wu, S.-Y., Wu, H.-T., Wang, Y.-C., Chang, C.-J., Shan, Y.-S., Wu, S.-R., Chiu, Y.-C., Hsu, C.-L., Juan, H.-F., Lan, K.-Y., Chu, C.-W., Lee, Y.-R., Lan, S.-H., Liu, H.-S. (2022) “Secretory autophagy promotes RAB37-mediated insulin secretion under glucose stimulation both in vitro and in vivo” Autophagy Sep 15:1-19. doi: 10.1080/15548627.2022.2123098.
  14. Li, P.-H., Chen, T.-F., Yu, J.-Y., Shih, S.-H., Su, C.-H., Lin, Y.-H., Tsai, H.-K., Juan, H.-F., Chen, C.-Y., Huang, J.-H. (2022) “pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature” Nucleic Acids Research 50(W1):W616-W622.
  15. Chang, Y.-W., Wang, C.-C, Yin, C.-F., Wu, C.-H., Huang, H.-C.*, Juan, H.-F.* (2022) “Quantitative phosphoproteomics reveals ectopic ATP synthase on mesenchymal stem cells to promote tumor progression via ERK/c-Fos pathway activation” Molecular & Cellular Proteomics 21(6):100237.
  16. Li, A., Chen, J.-Y., Hsu, C.-L., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2022) “A single-cell network-based drug repositioning strategy for post-COVID-19 pulmonary fibrosis” Pharmaceutics 14:971.
  17. Lee, R. K.-L., Li, T.-N., Chang, S.-Y., Chao, T.-L., Kuo, C.-H., Pan, M. Y.-C., Chiou, Y.-T., Liao, K.-J., Yang, Y., Wu, Y.-H., Huang, C.-H., Juan, H.-F., Hsieh, H.-P., Wang, L. H.-C. (2022) “Identification of entry inhibitors against delta and omicron variants of SARS-CoV-2” International Journal of Molecular Sciences 23:4050.
  18. Yin, C.-F.#, Chang, Y.-W.#, Huang, H.-C.*, Juan, H.-F.* (2022) “Targeting protein interaction networks in mitochondria dynamics for cancer therapy” Drug Discovery Today 27(4): 1077-1087.
  19. Ko, K.-Y., Chen, C.-Y., Juan, H.-F.* and Huang, H.-C.* (2022) “Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis” Bioinformatics 38(3):763-769.
  20. Chang, C.-S.#, Yu, W.-H.#, Ruan, J.-W., Huang, C.-T., Lin, C.-M., Tsai, Y.-T., Lin, I-J., Lai, C.-Y., Chang, C.-W., Chuang, T.-H., Lin, W.-J., Tan, T.-H., Huang, H.-C., Juan, H.-F. and Kao, C.-Y.* (2022) “Single-cell RNA sequencing uncovers the individual alteration of intestinal mucosal immunocytes in Dusp6 knockout mice” iScience 25(2):103738.
  21. Yu, P.-C.#, Huang, C.-H.#, Kuo, C.-J., Liang, P.-H., Wang, L.H.-C., Pan, M. Y.-C., Chang, S.-Y. Chao, T.-L., Ieong, S., Fang, J.-T., Huang, H.-C.*, Juan, H.-F.* (2022) “Drug repurposing for the identification of compounds with anti-SARS-CoV-2 capability via multiple targets” Pharmaceutics 14:176.
  22. Hsieh, C.-H.#, Yeh, H.-N.#, Huang, C.-T., Wang, W.-H., Hsu, W.-M., Huang, H.-C.*, Juan, H.-F.* (2022) “BI-2536 Promotes Neuroblastoma Cell Death via Minichromosome Maintenance Complex Components 2 and 10” Pharmaceuticals 15:37.
  23. Li, A., Yu, W.-H., Hsu, C.-L., Huang, H.-C.*, Juan, H.-F.* (2021) “Modular signature of long non-coding RNA association networks as a prognostic biomarker in lung cancer” BMC Medical Genomics 14:290.
  24. Chang, C.-S., Liao, Y.-C., Huang, C.-T., Lin, C.-M., Cheung, C. H. Y., Ruan, J.-W., Yu, W.-H., Tsai, Y.-T., Lin, I-J., Huang, C.-H., Liou, J.-S., Chou, Y.-H., Chien, H.-J., Chuang, H.-L., Juan, H.-F., Huang, H.-C., Chan, H.-L., Liao, Y.-C., Tang, S.-C., Su, Y.-W., Tan, T.-H., Bäumler, A. J., Kao, C.-Y.* (2021) “Discovery of a novel microbiota member that ameliorates dss-induced colitis in gut barrier enhanced Dusp6-deficient mice” Cell Reports 37:110016.
  25. Tu, Y.-H., Juan, H.-F.* and Huang, H.-C.* (2021) “Identification of cell states using super-enhancer RNA” BMC Genomics 22:787.
  26. Lee, K.-H., Chang, Y.-C., Chen, T.-F., Juan, H.-F., Tsai, H.-K., Chen, C.-Y. (2021) “Connecting MHC-I-binding motifs with HLA alleles via deep learning” Communications Biology 4:1194.
  27. Li, A., Huang, H.-T., Huang, H.-C.*, Juan, H.-F.* (2021) “LncTx: A network-based method to repurpose drugs acting on the survival-related lncRNAs in lung cancer” Computational and Structural Biotechnology Journal 19:3990-4002.
  28. Lee, T.-T., Chen, P.-L., Su, M. P., Li, J.-C., Chang, Y.-W., Liu, R.-W., Juan, H.-F., Yang, J.-M., Chan, S.-P., Tsai, Y.-C., von Stockum, S., Ziviani, E., Kamikouchi, A., Wang, H.-D. , Chen, C.-H. (2021) “Loss of Fis1 impairs proteostasis during skeletal muscle aging in Drosophila” Aging Cell 20(6):e13379.
  29. Wang, W.-H., Chen, S.-K., Huang, H.-C.*, Juan, H.-F.* (2021) “Proteomic analysis reveals metformin suppresses PSMD2, STIP1 and CAP1 for anti-gastric cancer AGS cell proliferation and migration” ACS Omega 6(22):14208-14219.
  30. Peng, C., Li, Y.-H., Yu, C.-W., Cheng, J.-H., Liu, J.-R., Hsu, J.-L., Hsin, L.-W., Huang, C.-T., Juan, H.-F., Chern, J.-W., Cheng, Y.-S. (2021) “Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity” Bioorganic Chemistry 110:104813.
  31. Chen, T.-F., Chang, Y.-C., Hsiao, Y., Lee, K.-H., Hsiao, Y.-C., Lin, Y.-H., Tu, Y.-C. E., Huang, H.-C., Chen, C.-Y.*, Juan, H.-F.* (2021) “DockCoV2: a drug database against SARS-CoV-2” Nucleic Acids Research 49(D1):D1152-D1159.
  32. Huang, C.-T., Chao, T.-L., Kao, H.-C., Pang, Y.-H., Lee, W.-H., Hsieh, C.-H., Chang, S.-Y.*, Huang, H.-C.*, Juan, H.-F.* (2020) “Enhancement of the IFN-β-induced host signature informs repurposed drugs for COVID-19” Heliyon 6(12):e05646 (Cell Press).
  33. Chang, Y.-W., Hsu, C.-L., Tang, C.-W., Chen, X.-J., Huang, H.-C.*, Juan, H.-F.* (2020) “Multiomics reveals ectopic ATP synthase blockade induces cancer cell death via a lncRNA-mediated phospho-signaling network” Molecular and Cellular Proteomics 19(11):1805-1825.
  34. Wu, A. Y.-T., Sun, Y.-C., Chen, Y.-J., Chou, S. T.-Y., Guo, V., Chien, J. C.-Y., Ko, J. J.-S., Yang, A. L., Huang, H.-C., Chuang, J.-C., Wu, S., Ho, M.-R., Ericsson, M., Lin, W.-W., Cheung, C. H. Y., Juan, H.-F., Ueda, K., Chen Y., Lai C. P.-K. (2020) “Multi-resolution imaging using bioluminescence resonance energy transfer identifies distinct biodistribution profiles of extracellular vesicles and exomeres with redirected tropism” Advanced Science 7: 2001467.
  35. Cheung, H. Y. C., Hsu, C.-L., Lin, T.-Y., Chen, W.-T., Wang, Y.-C., Huang, H.-C.*, Juan, H.-F.* (2020) “ZNF322A-mediated protein phosphorylation induces autophagosome formation through modulation of IRS1-AKT glucose uptake and HSP-elicited UPR in lung cancer” Journal of Biomedical Science 27(1):75.
  36. Wang, W.-H., Hsu, C.-L., Huang, H.-C.*, Juan, H.-F.* (2020) “Quantitative phosphoproteomics reveals cell alignment and mitochondrial length change under cyclic stretching in lung cells” International Journal of Molecular Sciences 21(11):E4074.
  37. Yin, C.-F., Kao, S.-C., Hsu, C.-L., Cheung, C. H.Y., Chang, Y.-W., Huang, H.-C.*, Juan, H.-F.* (2020) “Phosphoproteome analysis reveals dynamic heat shock protein 27 phosphorylation in tanshinone IIA-induced cell death” Journal of Proteome Research 19(4):1620-1634.
  38. Lee, P.-C. Chen, S.-T., Kuo, T.-C., Lin, T.-C., Lin, M.-C., Huang, J., Hung, J.-S., Hsu, C.-L., Juan, H.-F., Lee, P.-H., and Huang, M.-C. (2020) “C1GALT1 is associated with poor survival and promotes soluble Ephrin A1-mediated cell migration through activation of EPHA2 in gastric cancer” Oncogene 39(13):2724-2740.
  39. Lee, W.-H., Chen, K.-P., Wang, K., Huang, H.-C.*, Juan, H.-F.* (2020) “Characterizing the cancer-associated microbiome with small RNA sequencing data” Biochemical and Biophysical Research Communications 522:776-782.
  40. Chang, H.-C., Huang, H.-C., Juan, H.-F.*, Hsu, C.-L* (2019) “Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation” BMC Genomics 20(Suppl 10):896.
  41. Hsieh, C.-H., Cheung, C. H. Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C.*, Juan, H.-F.* (2019) “Quantitative proteomics of Th-MYCN transgenic mice reveals aurora kinase inhibitor altered metabolic pathways and enhanced ACADM to suppress neuroblastoma progression” Journal of Proteome Research 18(11):3850-3866.
  42. Cheung, H. Y. C., Hsu, C.-L., Tsuei, C.-Y., Kuo, T.-T., Huang, C.-T., Hsu, W.-M., Chung, Y.-H., Wu, H.-Y., Hsu, C.-C., Huang, H.-C.*, Juan, H.-F.* (2019) “Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy” Cell Death & Disease 10:786.
  43. Wu, P.-Y., Yu, I-S., Lin, Y.-C., Chang, Y.-T., Chen, C.-C., Lin, K.-H., Tseng, T.-H., Kargren, M., Tai, Y.-L., Shen, T.-L., Liu, Y.-L., Wang, B.-J., Chang, C.-H., Chen, W.-M., Juan, H.-F., Huang, S.-F., Chan, Y.-Y., Liao, Y.-F., Hsu, W.-M., Lee, H. (2019) “Activation of aryl hydrocarbon receptor by kynurenine impairs progression and metastasis of neuroblastoma” Cancer Research 79(21):5550-5562.
  44. Huang, C.-T., Hsieh, C.-H., Lee, W.-C., Liu, Y.-L., Yang, T.-S., Hsu, W.-M., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2019) “Therapeutic targeting of non-oncogene dependencies in high-risk neuroblastoma” Clinical Cancer Research 25(13):4063-4078.
  45. Huang, C.-T., Hsieh, C.-H., Chung, Y.-H., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2019) “Perturbational gene-expression signatures for combinatorial drug discovery” iScience 15:291-306 (Cell Press).
  46. Yang, T.-W., Sahu, D., Chang, Y.-W., Hsu, C.-L., Hsieh, C.-H., Huang, H.-C.*, Juan, H.-F.* (2019) “RNA-binding proteomics reveals MATR3 interacting with lncRNA SNHG1 to enhance neuroblastoma progression” Journal of Proteome Research 18: 406–416.
  47. Chang, J.-Y., Yu, W.-H., Juan, H.-F.*, Huang, H.-C.* (2018) “Dynamics of alternative polyadenylation in human preimplantation embryos” Biochemical and Biophysical Research Communications 504(4):727-733.
  48. Huang, C.-T., Hsieh, C.-H., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2018) “A large-scale gene expression intensity-based similarity metric for drug repositioning” iScience 7: 40-52. (Cell Press)
  49. Lin, M.-C., Chien, P.-H., Wu, H.-Y., Chen, S.-T., Juan, H.-F., Lou, P.-J.*, Huang, M.-C. (2018) “C1GALT1 predicts poor prognosis and is a potential therapeutic target in head and neck cancer” Oncogene Jun 21. doi: 10.1038/s41388-018-0375-0.
  50. Sahu, D., Ho, S.-Y., Juan, H.-F.*, Huang, H.-C.* (2018) “High-risk, expression-based prognostic long noncoding RNA signature in neuroblastoma” JNCI Cancer Spectrum 2(2): pky015.
  51. Cheng, A.-N., Fan, C.-C., Lo, Y.-K., Kuo, C.-L., Wang, H.-C., Lien, I-H., Lin, S.-Y., Chen, C.-H., Jiang, S. S., Chang, I-S., Juan, H.-F., Lyu, P.-C., Lee, A Y.-L.* (2017) “Cdc7-Dbf4-mediated phosphorylation of HSP90-S164 stabilizes HSP90-HCLK2-MRN complex to enhance ATR/ATM signaling that overcomes replication stress in cancer” Scientific Reports 7: 17024.
  52. Cheung, H. Y. C., Hsu, C.-L., Chen, K.-P., Chong, S.-T., Huang, H.-C.*, Juan, H.-F.* (2017) “MCM2-regulated functional networks in lung cancer by multi-dimensional proteomic approach” Scientific Reports 7(1):13302.
  53. Hsu, C.-L., Wang, J.-K., Lu, P.-C., Huang, H.-C.*, and Juan, H.-F.* (2017) “DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics” Bioinformatics 33(22):3664-3666.
  54. Hua, K.-T., Liu, Y.-F., Hsu, C.-L., Cheng, T.-Y., Yang, C.-Y., Chang, J.-S., Lee, W.-J., Hsiao, M., Juan, H.-F., Chien, M.-H.*, Yang, S.-F.* (2017) “3'UTR polymorphisms of carbonic anhydrase IX determine the miR-34a targeting efficiency and prognosis of hepatocellular carcinoma” Scientific Reports 7:4466.
  55. Cheung, C. H.-Y., Juan, H.-F.*. (2017) “Quantitative Proteomics in Lung Cancer” Journal of Biomedical Science 24:37.
  56. Liao, S.-Y., Chiang, C.-W., Hsu, C.-H., Jen, J., Juan, H.-F., Lai, W.-W., and Wang, Y.-C.* (2017) “CK1δ/GSK3β/FBXW7α axis promotes degradation of the ZNF322A oncoprotein to suppress lung cancer progression” Oncogene 36(41):5722-5733.
  57. Lin, T-.C., Chen, S.-T., Huang, M.-C., Huang, J., Hsu, C.-L., Juan, H.-F., Lin, H.-H., Chen, C.-H.* (2017) “GALNT6 expression enhances aggressive phenotypes of ovarian cancer cells by regulating EGFR activity” Oncotarget 8(26):42588-42601.
  58. Lin, M.-C., Lin, J.-J., Hsu, C.-L., Juan, H.-F., Lou, P.-J.*, Huang, M.-C.* (2017) “GATA3 interacts with and stabilizes HIF-1α to enhance cancer cell invasiveness” Oncogene 36(30):4380.
  59. Chang, H.-H., Liu, Y.-L., Lu, M.-Y., Jou, S.-T., Yang, Y.-L., Lin, D.-T., Lin, K.-H., Tzen, K.-Y. Yen, R.-F., Lu, C.-C., Liu, C.-J., Peng, S. S.-F., Jeng, Y.-M., Huang, S.-F., Lee, H., Juan, H.-F., Huang, M.-C., Liao, Y.-F., Lee, Y.-L.*, Hsu, W.-M.* (2017) “A multidisciplinary team care approach to improving outcomes in pediatric patients with high-risk neuroblastoma” Oncotarget 8(3):4360-72.
  60. Wang, Y.-T., Chiang, H.-H., Huang, Y.-S., Hsu, C.-L., Yang, P.-J., Juan, H.-F., Yang, W.-S.* (2016) “A link between adipogenesis and innate immunity: RNase-L promotes 3T3-L1 adipogenesis by destabilizing Pref-1 mRNA” Cell Death and Disease 7(11):e2458.
  61. Wu, C.-H., Hsu, C.-L., Lu, P.-C., Lin, W.-C., Juan, H.-F.*, Huang, H.-C.* (2016) “Identification of lncRNA functions in lung cancer based on associated protein-protein interaction modules” Scientific Reports 6:35939.
  62. Sahu, D., Hsu, C.-L., Lin, C.-C., Yang, T.-W., Hsu, W.-M., Ho, S.-Y., Juan, H.-F.*, Huang, H.-C.* (2016) “Co-expression analysis identifies long noncoding RNA SNHG1 as a novel predictor for event-free survival in neuroblastoma” Oncotarget ( Aug 9. doi: 10.18632/oncotarget.11158.)
  63. Hsu, C.-L., Chang, H.-Y., Chang, J.-Y., Hsu, W.-M., Huang, H.-C.* and Juan, H.-F.* (2016) “Unveiling MYCN regulatory networks in neuroblastoma via integrative analysis of heterogeneous genomics data” Oncotarget 7:36293-310.
  64. Lin, M.-T., Wang, C.-Y., Xie, H.-J., Cheung, C. H. Y., Hsieh, C.-H., Juan, H.-F., Chen, B.-S., C. Lin* (2016) “Novel Utilization of Terminators in the Design of Biologically Adjustable Synthetic Filters” ACS Synthetic Biology 5(5):365-74.
  65. Jen, J., Lin, L.-L., Chen, H.-T., Liao, S.-Y., Lo, F.-Y., Tang, Y.-A., Hsu, H.-S., Salgia, R., Hsu, C.-L., Huang, H.-C., Juan, H.-F.*, Wang, Y.-C.* (2016) “Oncoprotein ZNF322A transcriptionally deregulates alpha-adducin, cyclin D1 and p53 to promote tumor growth and metastasis in lung cancer” Oncogene 35(18):2357-69.
  66. Liu, S.-Y., Shun, C.-T., Hung, K.-Y., Juan, H.-F., Hsu, C.-L., Huang, M.-C.*, Lai1, I-R.* (2016) “Mucin glycosylating enzyme GALNT2 suppresses malignancy in gastric adenocarcinoma by reducing MET phosphorylation” Oncotarget 7(10):11251-62.
  67. Klionsky, D.-J., et al. (2016) “Guidelines for the use and interpretation of assays for monitoring autophagy” Autophagy 12(1):1-222.
  68. Hu, C.-W., Hsu, C.-L., Wang, Y.-C., Ishihama, Y., Ku, W-C., Huang, H.-C.* and Juan, H.-F.* (2015) “Temporal phosphoproteome dynamics induced by an ATP synthase inhibitor citreoviridin” Molecular & Cellular Proteomics 14(12):3284-98.
  69. Hsu, C.-L., Juan, H.-F.*, and Huang, H.-C.* (2015) “Characterization and functional analysis of differential coexpression networks” Scientific Reports 5:13295.
  70. Lin, L.-L., Hsu, C.-L., Hu, C.-W., Ko, S.-Y., Hsieh, H.-L., Huang, H.-C.*, Juan, H.-F.* “Integrating phosphoproteomics and bioinformatics to study brassinosteroid-regulated phosphorylation dynamics in Arabidopsis” BMC Genomics 16:533. (Highly accessed)
  71. Lin, L.-L., Huang, H.-C.*, Juan, H.-F.* (2015) “Circadian systems biology in metazoa” Briefings in Bioinformatics 16(6):1008-24.
  72. Huang, M.-J., Hu, R.-H., Chou, C.-H., Hsu, C.-L., Liu, Y.-W., Huang, J., Hung, J.-S., Lai, I-R., Juan, H.-F., Yu, S.-L., Wu, Y.-M.* and Huang, M.-C.* (2015) “Knockdown of GALNT1 suppresses malignant phenotype of hepatocellular carcinoma by suppressing EGFR signaling” Oncotarget 6(8):5650-65.
  73. Lee, A. Y.-L.*, Chiu, Y.-C., Fang, W.-C., Cheng, C.-W., Kuo, C.-Y., Juan, H.-F., Wu, S.-H.* and Kao, T.-Y.* (2015) “Mitochondrial Lon regulates apoptosis through the association with Hsp60-mtHsp70 complex” Cell Death & Disease 6:e1642.
  74. Lin, L.-L., Hsia, C.-R., Hsu, C.-L., Huang, H.-C.* and Juan, H.-F.* (2015) “Integrating transcriptomics and proteomics to show that tanshinone IIA suppresses cell growth by blocking glucose metabolism in gastric cancer cells” BMC Genomics 16(1):41.
  75. Chang, H.-Y., Li, M.-H., Huang, T.-C., Hsu, C.-L., Tsai, S.-R., Lee, S.-C.*, Huang, H.-C.* and Juan, H.-F.* (2015) “Quantitative proteomics reveals middle infrared radiation-interfered networks in breast cancer cells” Journal of Proteome Research 14(2):1250-62.
  76. Chang, H.-Y., Huang, T.-C., Chen, N.-N., Huang, H.-C.* and Juan, H.-F.* (2014) “Combination therapy targeting ectopic ATP synthase and 26s proteasome induces ER stress in breast cancer cells” Cell Death & Disease 5:e1540.
  77. Chen, C.-Y., Ho, A., Huang, H.-Y., Juan, H.-F.* and Huang, H.-C.* (2014) “Dissecting the human protein-protein interaction network via phylogenetic decomposition” Scientific Reports 4:7153.
  78. Huang, C.-T., Oyang, Y.-J., Huang, H.-C.* and Juan, H.-F.* (2014) “MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma” Scientific Reports 4:6495.
  79. Lin, L.-L., Huang, H.-C.*, Juan, H.-F.* (2014) “Deciphering molecular determinants of chemotherapy in gastrointestinal malignancy using systems biology approaches” Drug Discovery Today 19(9):1402-1409.
  80. Yang, K.-C., Hsu, C.-L., Lin, C.-C., Juan, H.-F.* and Huang, H.-C.* (2014) “Mirin: identifying microRNA regulatory modules in protein-protein interaction networks” Bioinformatics 30(17):2527-2528.
  81. Chen. C.-M., Chen, I.-C., Huang, Y.-C., Juan, H.-F., Chen, Y.-L., Chen, Y.-C., Lin, C.-H., Lee, L.-C., Lee, C.-M., Lee-Chen, G.-J., Lai, Y.-J., and Wu, Y.-R. (2014) “FBXO7 Y52C Polymorphism as a Potential Protective Factor in Parkinson's Disease” PLoS ONE 9(7):e101392.
  82. Hsieh, L.-C., Chen, J.-W., Wang, L.-Y., Tsang, Y.-M., Shueng, P.-W., Liao, L.-J., Lo, W.-C., Lin, Y.-C., Tseng, C.-F., Kuo, Y.-S., Jhuang, J.-Y., Tien, H.-J., Juan, H.-F., Hsieh, C.-H. (2014) “Predicting the severity and prognosis of trismus after intensity-modulated radiation therapy for oral cancer patients by magnetic resonance imaging” PLoS ONE 9(3):e92561.
  83. Huang, W.-J., Tang, Y.-A., Chen, M.-Y, Wang, Y.-J., Hu, F.-H., Wang, T.-W., Chao, S.-W. Chiu, H.-W., Yeh, Y.-L., Chang, H.-Y., Juan, H.-F., Lin, P.*, and Wang, Y.-C.* (2014) “A histone deacetylase inhibitor YCW1 with antitumor and antimetastasis properties enhances cisplatin activity against non-small cell lung cancer in preclinical studies” Cancer Letter 346(1):84-93.
  84. Wu, P.-Y., Liao, Y.-F., Juan, H.-F., Huang, H.-C., Wang, B.-J., Lu, Y.-L., Yu, I-S., Shih, Y.-Y., Jeng, Y.-M., Hsu, W.-M.*, and Lee, H.* (2014) “Aryl hydrocarbon receptor downregulates mycn expression and promotes cell differentiation of neuroblastoma” PLoS ONE 9(2): e88795.
  85. Hu, C.-W., Tseng, C.-W., Chien, C.-W., Huang, H.-C., Ku, W.-C., Lee, S.-J.*, Chen, Y.-J.* and Juan, H.-F.* (2013) “Quantitative proteomics reveals diverse roles of miR-148a from gastric cancer progression to neurological development” Journal of Proteome Research 12(9):3993-4004.
  86. Wu, Y.-H., Hu, C.-W., Chien, C.-W., Chen, Y.-J., Huang, H.-C.* and Juan, H.-F.* (2013) “Quantitative proteomic analysis of human lung tumor xenografts treated with the ectopic ATP synthase inhibitor citreoviridin” PLoS ONE 8(8):e70642.
  87. Lin, L.-L., Wu, C.-C., Huang, H.-C.*, Chen, H.-J. Hsieh, H.-L.*, and Juan, H.-F.* (2013) “Identification of microRNA 395a in 24-epibrassinolide-regulated root growth of Arabidopsis thaliana using microRNA arrays” International Journal of Molecular Sciences 14:14270-14286.
  88. Lin, C.-C., Lee, C.-H., Fuh, C.-S., Juan, H.-F.* and Huang, H.-C.* (2013) “Link clustering reveals structural characteristics and biological contexts in signed molecular networks” PLoS ONE 8(6): e67089.
  89. Lee, C.-H., Kuo, W.-H., Lin, C.-C., Oyang, Y.-J., Huang, H.-C.* and Juan, H.-F.* (2013) “MicroRNA-regulated protein-protein interaction networks and their functions in breast cancer” International Journal of Molecular Sciences 14:11560-11606.
  90. Liaw, H.-H., Lin, C.-C., Juan, H.-F.* and Huang, H.-C.* (2013) “Differential microRNA regulation correlates with alternative polyadenylation pattern between breast cancer and normal cells” PLoS ONE 8(2): e56958.
  91. Chang, H.-Y., Shih, M.-H., Huang, H.-C., Tsai, S.-R., Juan, H.-F.*, Lee, S.-C.* (2013) “Middle Infrared Radiation Induces G2/M Cell Cycle Arrest in A549 Lung Cancer Cells” PLoS ONE 8(1): e54117.
  92. Fu, S.-C., Huang, H.-C., Horton, P.* and Juan, H.-F.* (2013) “ValidNESs: a database of validated leucine-rich nuclear export signals” Nucleic Acids Research 41(D1):D338-D343.
  93. Chen, C.-Y., Chen, S.-T., Juan, H.-F.* and Huang, H.-C.* (2012) “Lengthening of 3’UTR increases morphological complexity in animal evolution” Bioinformatics 28(24):3178-3181.
  94. Lu, K.-Y., Tao, S.-C., Yang, T.-C., Ho, Y.-H., Lee, C.-H., Lin, C.-C., Juan, H.-F., Huang, H.-C. , Yang, C.-Y., M,-S, Chen, H. Zhu*, and C.-S. Chen* (2012) “Profiling lipid-protein interactions using non-quenched fluorescent liposomal nanovesicles and proteome microarrays” Molecular & Cellular Proteomics 11(11):1177-1190.
  95. Hu, C.-W., Lin, M.-H., Huang, H.-C., Ku, W.-C., Yi, T.-H., Tsai, C.-F., Chen, Y.-J., Sugiyama, N., Ishihama, Y.*, Juan, H.-F.*, and Wu, S.-H.* (2012) “Phosphoproteomic analysis of Rhodopseudomonas palustris reveals the role of pyruvate phosphate dikinase phosphorylation in lipid production” Journal of Proteome Research 11:5362-5375.
  96. Lin, L.-L., Wang, Y.-H., Lai, C.-Y., Chau, C.-L., Su, G.-C., Yang, C.-Y., Lou, S.-Y., Chen, S.-K., Hsu, K.-H., Lai, Y.-L., Wu, W.-M., Huang, J.-L., Liao, C.-H. and Juan, H.-F.* (2012) “Systems biology of meridians, acupoints, and Chinese herbs in disease” Evidence-Based Complementary and Alternative Medicine 2012:372670.
  97. Lin, L.-L., Huang, H.-C., Ogihara, S., Wang, J.-T., Wu, M.-C., McNeil, P. L.*, Chen, C.-N.* and Juan, H.-F.* (2012) “Helicobacter pylori disrupts host cell membranes, initiating a repair response and cell proliferation” International Journal of Molecular Sciences 13:10176-10192.
  98. Lin, L.-L., Huang, H.-C.*, and Juan, H.-F.* (2012) “Revealing the molecular mechanism of gastric cancer marker Annexin A4 in cancer cell proliferation using exon arrays” PLoS ONE 7(9):e44615.
  99. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Yang, P.-C.*, Wang, Y.-C.*, and Juan, H.-F.* (2012) “Ectopic ATP synthase blockade suppresses lung adenocarcinoma growth by activating the unfolded protein response” Cancer Research 72(18):4696-4706.
  100. Lin, L.-L., Huang, H.-C.* and Juan, H.-F.* (2012) “Discovery of biomarkers for gastric cancer: a proteomics approach” Journal of Proteomics 75(11):3081-3097.
  101. Chang, M.-W., Lo, J.-M., Juan, H.-F., H.-Y. Chang, Chuang, C.-Y. (2012) “Combination of RGD compound and low-dose Paclitaxel induces apoptosis in human glioblastoma cells” PLoS ONE 7(5):e37935
  102. Tseng, C.-W., Huang, H.-C., Shih, A. C.-C., Chang, Y.-Y., Hsu, C. C., Chang, J.-Y., Li, W.-H.* and Juan, H.-F.* (2012) “Revealing the anti-tumor effect of artificial miRNA p-27-5p on human breast carcinoma cell line T-47D” International Journal of Molecular Sciences 13:6352-6369.
  103. Lin, C.-C., Chen, Y.-J., Chen, C.-Y., Oyang, Y.-J., Juan, H.-F.* and Huang, H.-C.* (2012) “Crosstalk between transcription factors and microRNAs in human protein interaction network” BMC Systems Biology 6(1):18.
  104. Shih, Y.-Y., Nakagawara, A., Lee, H., Juan, H.-F., Jeng, Y.-M., Lin, D.-T., Yang, Y.-L., Tsay, Y.-G., Huang, M.-C., Pan, C.-Y. *, Hsu, W.-M.*, and Liao, Y.-F.* (2012) “Calreticulin mediates nerve growth factor-induced neuronal differentiation” Journal of Molecular Neuroscience 47(3):571-81.
  105. Hu, C.-W., Chang, Y.-L., Chen, S. J., Kuo-Huang, L.-L., Liao, J. C., Huang, H.-C.*, Juan, H.-F.* (2011) “Revealing the functions of the transketolase enzyme isoforms in Rhodopseudomonas palustris using a systems biology approach” PLoS ONE 6:e28329.
  106. Huang, T.-C., Chang, H.-Y., Chen, C.-Y., Wu, P.-Y., Lee, H., Liao, Y.-F., Hsu, W.-M.*, Huang, H.-C.*, Juan, H.-F.* (2011) “Silencing of miR-124 induces neuroblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR” FEBS Letters 585:3582-3586.
  107. Tsai, S.-R.#, Huang, T.-C.#, Liang, C.-M., Chang, H.-Y., Chang, Y.-T., Huang, H.-C., Juan, H.-F.*, Lee, S.-C.* (2011) “The effect of narrow bandwidth infrared radiation on the growth of Escherichia coli” Applied Physics Letters 99, 163704. (# equal contribution)
  108. Shih, Y.-Y., Pan, C,-Y, Lee, H., Juan, H.-F., A. Nakagawara, Clagett-Dame, M., Tsay, Y.-G., Hsieh, F.-J., Hsu, W.-M.*, Liao, Y.-F. * (2011) “Nuclear GRP75 binds retinoic acid receptors to promote neuronal differentiation of neuroblastoma” PLoS ONE 6(10):e26236
  109. Chen, S.-T., Jeng, Y.-M., Chang, C.-C., Chang, H.-H., Huang, M.-C., Juan, H.-F., Hsu, C.-H., Lee, H.-Y., Liao, Y.-F, Lee, Y.-L., Hsu, W.-M.*, Lai, H.-S.* (2011) “Insulin-like growth factor II mRNA-binding protein 3 expression predicts unfavorable prognosis in patients with neuroblastoma” Cancer Science 102:2191-2198.
  110. Lee, C.-H., Huang, H.-C.*, Juan, H.-F.* (2011) “Reviewing ligand-based rational drug design: the search for an ATP synthase inhibitor” International Journal of Molecular Sciences 12:5304-5318.
  111. Chen, C.-M., Lin, C.-H., Juan, H.-F., Hu, F.-J., Hsiao, Y.-C., Chang, H.-Y., Chao, C.-Y., Chen, I.-C., Lee, L.-C., Wang, T.-W., Chen, Y.-T., Chen, Y.-T., Lee-Chen, G.-J.*, Wu, Y.-R. (2011) ATP13A2 variability in Taiwanese Parkinson's disease. Am J Med Genet B Neuropsychiatr Genet. 156:720-729.
  112. Tseng, C.-W., Lin, C.-C., Chen, C.-N.*, Huang, H.-C.*, Juan, H.-F.* (2011) “Integrative network analysis reveals active microRNAs and their functions in gastric cancer” BMC Systems Biology 5:99. (Highly accessed)
  113. Tseng, C.-W., Yang, J.-C., Chen, C.-N.*, Huang, H.-C., Chuang, K.-N., Lin, C.-C., Lai, H.-S., Lee, P.-H., Chang, K.-J., Juan, H.-F.* (2011) “Identification of 14-3-3β in human gastric cancer cells and its potency as a diagnostic and prognostic biomarker” Proteomics 11:2423-2439.
  114. Chen, J.-Y., Huang, S.-M., Tang, Y.-A., Juan, H.-F., Wu, L.-W., Sun, Y.-C., Wang, S.-C., Wu, K. W., Balraj, G., Chang, T.-T., Li, W.-S.*, Cheng, H.-C.*, Wang, Y.-C.* (2011) “A novel sialyltransferase inhibitor suppresses FAK/paxillin and angiogenesis signaling and cancer metastasis.” Cancer Research, 71:473-483.
  115. Chen, C.-Y., Chen, S.-T., Fuh, C.-S., Juan, H.-F.*, Huang, H.-C.*, “Coregulation of transcription factors and microRNAs in human transcriptional regulatory network”, BMC Bioinformatics, 12(Suppl 1):S41 (2011).
  116. Lin, C.-C., Hsiang, J.-T., Wu, C.-Y., Oyang, Y.-J., Juan, H.-F., Huang, H.-C.* “Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy.” BMC Systems Biology, 4:138 (2010).
  117. Chang, H.-H., Lee, H.-Y., Hu, M.-K., Tsao, P.-N., Juan H.-F., Huang, M.-C., Shih, Y.-Y., Wang, B.-J., Jeng, Y.-M., Chang, C., Huang, S.-F., Y.-G. Tsay, Hsieh, F.-J., Lin, K.-H.*, Hsu, W.-M.*, and Liao, Y.-F.* (2010) “Notch1 expression predicts an unfavorable prognosis and serves as a therapeutic target of patients with neuroblastoma.” Clinical Cancer Research, 16:4411-20.
  118. Hsu J.-W., Huang H.-C., Lee T.-Y., Chen S.-T., Wong C.-H., Juan H.-F.* (2009) “Ganoderma lucidum polysaccharides induce macrophage-like differentiation in human leukemia THP-1 cells via caspase and p53 activation.” Evidence-based Complementary and Alternative Medicine, doi: 10.1093/ecam/nep107.
  119. Hwang Y.-C., Lin C.-C., Chang J.-Y., Mori H., Juan H.-F.*, Huang H.-C.* (2009) “Predicting essential genes based on network and sequence analysis.” Molecular BioSystems, 5:1672–1678.
  120. Lin, C.-C., Juan, H.-F., Hsiang, J.-T., Hwang, Y.-C., Mori, H.*, Huang, H.-C.* (2009) “Essential core of protein-protein interaction network in Escherichia coli.” Journal of Proteome Research 8:1925–1931.
  121. Chang, Y.-M., Juan, H.-F., Lee, T.-Y., Chang, Y.-Y., Yeh, Y.-M., Li, W.-H.*, Shih, A. C.-C.* (2008) “Prediction of human miRNAs using tissue-selective motifs in 3' UTRs.” Proc. Natl. Acad. Sci. U S A 105:17061-17066. (highlighted in Nature Biotechnology and featured in Science-Business eXchange SciBX).
  122. Fang, Y.-C., Huang, H.-C., Chen, H.-H. and Juan, H.-F.* (2008) “TCMGeneDIT: a database for associated traditional Chinese medicine, gene and disease information using text mining.” BMC Complementary and Alternative Medicine 8:58.
  123. Hsu, W.-M., H.-Y. Lee, Juan, H.-F., Y.-Y. Shih, B-J. Wang, C.-Y. Pan, Y.-M. Jeng, H.-H. Chang, M.-Y. Lu, K.-H. Lin, H.-S. Lai, W.-J. Chen, Y.-G. Tsay*, Y.-F. Liao*, F.-J. Hsieh* (2008) “Identification of GRP75 as an Independent Favorable Prognostic Marker of Neuroblastoma by a Proteomics Analysis.” Clinical Cancer Research 14:6237-6245.
  124. Hsu, C.-W., Juan, H.-F.*, Huang, H.-C.* (2008) “Characterization of microRNA-regulated protein-protein interaction network” Proteomics, 8:1575-1579.
  125. Lin, L.-L., C.-N. Chen*, Lin, W.-C., Lee, P.-H., Chang, K.-J., Lai, Y.-P., Wang, J.-T. and Juan, H.-F.* (2008) “Annexin A4: A novel molecular marker for gastric cancer with Helicobacter pylori infection using proteomics approach.” Proteomics: Clinical Applications 2:619–634.
  126. Chen, H.-W., Huang, H.-C., Lin, Y.-S., Chang, K.-J., Kuo, W.-H., Hwa, H.-L., Hsieh, F.-J.*, Juan, H.-F.* (2008) “Comparison and Identification of Estrogen-Receptor Related Gene Expression Profiles in Breast Cancer of Different Ethnic Origins.” Breast Cancer: Basic and Clinical Research 1:35-49.
  127. Tan, Y-H., Lee, K.-H., Sun, Y.-C., Juan, H.-F.* and Y.-C. Wang* (2008) “Cytotoxicity and proteomics analyses of OSU03013 in lung cancer.” Clinical Cancer Research, 14:1823-1830.
  128. Huang, T.-C., Chang, H.-Y., Hsu, C.-H., Kuo, W.-H., Chang, K.-J., Juan, H.-F.* (2008) “Targeting Therapy on Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B” Journal of Proteome Research 7:1433-1444. (featured in ACS Weekly News)
  129. Chen, S.-T., Pan, T.-L., Juan, H.-F., Chen, T.-Y., Lin, Y.-S., Huang, C.-M.* (2008) “Breast Tumor Microenvironment: Proteomics Highlights the Treatments Targeting Secretome and Extracellular Matrix” Journal of Proteome Research, 7:1379–1387. (review)
  130. Fang, Y.-C., Huang, H.-C.*, Juan, H.-F.* (2008) “MeInfoText: Associated Gene Methylation and Cancer Information from Text Mining” BMC Bioinformatics 9:22.
  131. Huang, B., Ni, K.-C., Chen, S.-L., Juan, H.-F.*, Chen, Y.-M.* (2008) “Elucidating the Growth Regulation of Brassinosteroids in Mung Bean Epicotyls using a Proteomics Approach.” Proteomics Research Journal 1:1-18.
  132. Lien, H.-C., Hsiao, Y.-H., Lin, Y.-S., Yao, Y.-T., Juan, H.-F., Kuo, W.-H., Hung, M.-C., Chang, K.-J., Hsieh, F.-J.* (2007) “Molecular Signatures of Metaplastic Carcinoma of the Breast by Large-Scale Transcriptional Profiling: Identification of Genes Potentially Related to Epithelial-Mesenchymal Transition.” Oncogene 26:7859-71.
  133. Cheng, K.-C., Huang, H.-C., Chen, J.-H., Hsu, J.-W., Cheng, H.-C., Ou, C.-H., Yang, W.-B., Chen, S.-T., Wong, C.-H. and Juan, H.-F.* (2007) “Ganoderma lucidum polysaccharides in human monocytic leukemia cells: from gene expression to network construction” BMC Genomics 8:411.
  134. Huang, T.-C., Huang, H.-C., Chang, C.-C., Chang, H.-Y., Ou, C.-H., Hsu, C.-H., Chen, S.-T. and Juan, H.-F.* (2007) “An Apoptosis-related Gene Network Induced by Novel Compound-cRGD in Human Breast Cancer Cells.” FEBS Letters 581:3517-3522.
  135. Leu, J.-H., Chang, C.-C., Wu, J.-L., Hsu, C.-W., Hirono, I., Aoki, T., Juan, H.-F., Lo, C.-F., Kou, G.-H.*, Huang H.-C.* (2007) “Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon.” BMC Genomics 8:120.
  136. Fang, Y.-C., Sun, W.-H.*, Wu, L.-C., Huang, H.-D., Juan, H.-F., Horng, J.-T.* (2006) “RINGdb: An integrated database for G protein-coupled receptors and regulators of G protein signaling.” BMC Genomics 7:317.
  137. Tseng, H.-W., Juan, H.-F., Huang, H.-C., Lin, J. Y.-C., Sinchaikul, S., Chen, C.-F., Chen, S.-T.*, Wang*, G.-J. (2006) “A systems biology study of lipopolysaccharide-stimulated responses in rat aortic endothelial cell.” Proteomics 6:5915-5928.
  138. Chen, Y.-R., Juan, H.-F., Huang, H.-C., Huang, H.-H., Lee, Y.-J., Liao, M.-Y., Tseng, C.-W., Lin, L.-L., M.-Y. Chen, J.-Y., Wang, M.-J., J.-H. Chen*, Y.-J. Chen* (2006) “Quantitative Proteomic and Genomic Profiling Reveals Metastasis-Related Protein Expression Patterns in Gastric Cancer Cells.” Journal Proteome Research 5:2727-2742.
  139. Huang, B., Chu, C.-H., Chen, S.-L., Juan, H.-F.* and Chen, Y.-M.* (2006) “Proteomics Study of Mung Bean Epicotyl Regulated by Brassinosteroid under Chilling Condition.” Cellular & Molecular Biology Letters 11:264-278.
  140. Juan, H.-F.*, Wang, I-H., Huang, T.-C., Li, J.-J., Chen, S.-T., Huang, H.-C. (2006) “Proteomics analysis of a novel compound – cyclic RGD in breast carcinoma cell line MCF-7.” Proteomics 6:2991-3000. (Cover Picture)
  141. Lee, T.-Y., Horng, J.-T., Juan, H.-F., Huang, H.-D., Wu, L.-C., Lin, F.-M., Huang, H.-C (2006) “An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints.” Journal of Computational Chemistry 27:1020-1032.
  142. Horng, J.-T., Lee, T.-Y., Wu, L.-C., Huang, H.-D., Juan, H.-F., Lin, F.-M. (2005) “MultiProtIdent: Identifying Proteins Using Database Search and Protein-Protein Interactions.” Journal Proteome Research 4:690-697.
  143. Juan, H.-F.*, Chang, S.-C., Huang, H.-C., Chen, S.-T. (2005) “A New Application of Microwave Technology to Proteomics.” Proteomics 5:840-842.
  144. Wu, C.-C., Huang, H.-C., Juan, H.-F., Chen, S.-T. (2004) “GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data.” Bioinformatics 20: 3691-3693.
  145. Chen, C.-Y., Oyang, Y.-J., Juan, H.-F. (2004) “Incremental generation of summarized clustering hierarchy for protein family analysis.” Bioinformatics 20:2586-96.
  146. Juan, H.-F., Chen, J.-H., Hsu, W.-T., Huang, S.-C., Chen, S.-T., Lin, J. Y. C., Chang, Y.-W. Chiang, C.-Y., Wen, L.-L., Chan, D.-C., Liu, Y.-C., Chen, Y.-J. (2004) “Identification of tumor-associated plasma biomarkers using proteomic techniques: from mouse to human.” Proteomics 4: 2766-2775. (Cover Picture).
  147. Wu, C.-Y. Jan, J.-T., Ma, H.-H., Kuo, C.-J., Juan, H.-F., Cheng, Y.-S. E., Hsu, H.-H., Huang, H.-C., Wu, D., Brik, A., Liang, F.-S., Liu, R.-S., Fang, J.-M., Chen, S.-T., Liang, P.-H. and Chi-Huey Wong (2004) “Small molecules targeting Severe Acute Respiratory Syndrome (SARS) human coronavirus.” Proc. Natl. Acad. Sci. U S A 101: 10012-10017.
  148. Juan, H.-F., Liu, H.-L., Hsu, J.-P. (2004) “Recent developments in structural proteomics: from protein identifications and structure determinations to protein-protein interactions” Current Proteomics 1: 183-197. (Invited review paper)
  149. Chang, D. T.-H, Chen, C.-Y., Chung, W.-C., Oyang, Y.-J., Juan, H.-F., Huang, H.-C. (2004) “ProteMiner-SSM: A web server for efficient analysis of similar protein tertiary substructures” Nucleic Acids Research. 32: W76-82.
  150. Wu, S.-F., Liu, T.-M., Lin, Y.-C., Sytwu, H.-K., Juan, H.-F., Chen, S.-T., Shen, K.-L., Hsi, S.-C., Hsieh, S.-L. (2004) “Immunomodulatory effect of decoy receptor 3 on the differentiation and function of bone-marrow-derived dendritic cells in non-obese diabetic mice: From regulatory mechanism to clinical implication” Journal of Leukocyte Biology 75: 1-14.
  151. Juan, H.-F., Lin, J. Y. C., Chang, W. H., Wu, C. Y., Pan, T. L. Tseng, M. J., Khoo, K. H. and Chen, S. T. (2002) “Biomic study of human myloid leukemia cell (HL-60) differentiated to macrophage using DNA array , proteomic, and bioinformatic analytical methods” Electrophoresis 23: 2490 -2504.
  152. Sinchaikul, S., Sookkheo, B., Topanuruk, S., Juan, H.-F., Phutrakul, S., and Chen, S.-T. (2002) “The bioinformatics, functional genomics, and proteomics study of Bacillus sp.” J. Chromatogr B 771: 261-287.
  153. Xu, D.-H., Juan, H.-F., Nohda, M., Ban, T. (2001) “Optimization of AFLP method in wheat and its application to QTL mapping for spike characters” Breeding Research 3: 25.
  154. Juan, H.-F., Hung, C.-C., Wang, K.-T., Chiou, S.-H.* (1999) “Comparison of three classes of snake neurotoxins by homology modeling and computer simulation graphics.” Biochem Biophys Res Commun. 257: 500-510.

Conference Proceedings / 研討會論文

  1. Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* “Exploring the mechanism of profibrotic macrophage differentiation in COVID-19-induced pulmonary fibrosis at single cell level” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024. (Best Poster Award)
  2. Hu, K.-J., Tseng, T.-Y., Hsieh, C.-H., Hsu, C.-L., Huang, H.-C.*, Juan, H.-F.* “Single-cell multi-omics analysis of neuroblastoma cell differentiation” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024. (Best Poster Award)
  3. Tung, K.-C., Tu, Y.-H., Juan, H.-F.*, Huang, H.-C.* “A Framework for modeling single-cell RNA velocity and epigenome-transcriptome interactions” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024. (Best Poster Award)
  4. Weng, W.-T., Tseng, T.-Y., Huang, H.-C.*, Juan, H.-F.* “Distance-based module detection method for identifying stage transitional gene sets and drug discovery in neuroblastoma through single-cell RNA sequencing” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024.
  5. Hsu, P.-Y., Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* “Deciphering the role of tumor-associated macrophages in head and neck squamous cell carcinoma from single-cell RNA sequencing” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024.
  6. Liu, I-C., Tseng, T.-Y., Huang, H.-C.*, Juan, H.-F.* “Single-cell RNA-seq analysis reveals stage-specific regulatory lncRNAs in neuroblastoma progression” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024.
  7. Chiang, C.-P., Hsu, C.-L., Juan, H.-F.*, Huang, H.-C.* “Predicting age with cellular gene expression dispersion” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024.
  8. Lee, S.-C., Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* “Comparative analysis of tissue fibrosis pathogenesis in systemic sclerosis: a single-cell RNA sequencing study of skin and lung samples” 2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024.
  9. Shih, J.-C., Kuo, C.-H., Hsieh, C.-H., Chang, H.-Y., Huang, C.-H., Hsu, C.-H., Huang, H.-C.*, Juan, H.-F.* “Therapeutic targeting of dihydroorotate dehydrogenase (DHODH) in neuroblastoma: modulating lipid metabolism and ferroptosis” 38th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24, 2024. (Best Poster Award)
  10. Chen, Y.-J., Kao, Y.-C., Huang, C.-H., Wang, X.-C., Chang, Y.-W., Huang, H.-C.*, Juan, H.-F.* “Role of chromogranin-A in TNT-mediated intercellular transfer: alleviating hypoxic stress in neuroblastoma” 38th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24, 2024.
  11. Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* “Exploring the mechanism of monocyte-to-profibrotic macrophage differentiation at a single-cell level in pulmonary fibrosis induced by COVID-19” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 11-12, 2023. (Best Abstract Award by American Physiology Society, one of Top 4 among 103)
  12. Tseng, T.-Y., Liao, Y.-C., Hsu, C.-L., Ou, D.-L., Hsu, C., Huang, H.-C.*, Juan, H.-F.* “Single-cell RNA-seq uncovers cancer-associated fibroblast subgroup linked to immune resistance in hepatocellular carcinoma” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 11-12, 2023. (Best Poster Award)
  13. Chen, Y.-X., Li, A., Hsieh, C.-H., Huang, H.-C.*, Juan, H.-F.* “Drug discovery for high-risk neuroblastoma by targeting tumor heterogeneity at single-cell level” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 11-12, 2023. (Best Poster Award)
  14. Tung, K.-C., Tu, Y.-H., Hsu, C.-L., Juan, H.-F.*, Huang, H.-C.* “A framework for modeling single-cell RNA velocity and epigenome transcriptome Interactions” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 11-12, 2023. (Best Poster Award)
  15. Ye, Y.-Z., Chou, T.-Y., Lin, I-J., C.-J. Lien, Jiang, C.-L., Yang, C.-H., Chao, P.-A., Chen, Y.-T. Sun, Y.-Y., Juan, H.-F., Lin, F.-J., Lin, J.-D.* “Single cell multi-omics analysis identified the roles of serum amyloid a3 (saa3) in regulating macrophage dynamics” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 11-12, 2023. (Best Poster Award)
  16. Shih, J.-C., Kuo, C.-H., Chang, H.-Y., Hsieh, C.-H., Huang, H.-C.*, Juan, H.-F.* “Exploring dihydroorotate dehydrogenase (DHODH) as a potential neuroblastoma therapeutic target” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 11-12, 2023.
  17. Wang, Y.H., Hsieh, C.-H., Liu, J.-S., Huang, H.-C.*, Juan, H.-F.* “Revealing the role of long non-coding RNA MCM3AP-AS1 in high-risk neuroblastoma” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 11-12, 2023.
  18. Tseng, T.-Y., Hsu, C.-L. Ou, D.-L. Hsu, C., Huang, H.-C.*, Juan, H.-F.* “Transcriptional regulation of T cell exhaustion in immune checkpoint blockade resistance at single-cell resolution” The 82nd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan. Sep. 21-23, 2023. (Travel Award)
  19. Kao, Y.-C., Chang, Y.-W., Lai, C. P., Chang, N.-W., Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* “Ectopic ATP synthase stimulates the secretion of extracellular vesicles in cancer cells” The 82nd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan. Sep. 21-23, 2023. (Travel Award)
  20. Kuo, C.-H., Chang, Y.-W., Huang, H.-C.*, Juan, H.-F.* “Drug repositioning for neuroblastoma therapy via targeting dihydroorotate dehydrogenase in mitochondrial dynamics” The Joint 11th Asia Oceania Human Proteome Organization (AOHUPO) and 7th Asia Oceania Agricultural Proteomics Organization (AOAPO) Congress, May 8-10, 2023, Singapore. (Travel Award)
  21. Yu, P.-C., Kao, Y.-C., Huang, C.-T., Chang, H.-Y., Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* “Combined treatment of pyrvinium and sirolimus for targeting non-oncogene dependencies in high-risk neuroblastoma with proteomic analysis” The Joint 11th Asia Oceania Human Proteome Organization (AOHUPO) and 7th Asia Oceania Agricultural Proteomics Organization (AOAPO) Congress, May 8-10, 2023, Singapore. (Travel Award)
  22. Kuo, C.-H., Chang, Y.-W., Huang, H.-C.*, Juan, H.-F.* “Drug repositioning for neuroblastoma therapy via targeting dihydroorotate dehydrogenase in mitochondrial dynamics ” 37th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 18-19, 2023. (Best Poster Award)
  23. Chen, Y.-X., Li, A., Hsieh, C.-H., Chang, Y.-W., Huang, H.-C.*, Juan, H.-F.* “Drug discovery for high-risk neuroblastoma via targeting tumor heterogeneity at single-cell level” 37th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 18-19, 2023.
  24. Wen, J.-H., Hsieh, C.-Y., Huang, J.-H.*, Juan, H.-F.*, Huang, H.-C.* “Gene expression dispersion reflects the disease state from single-cell transcriptomic data” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 19-20, 2022. (Best Poster Award)
  25. Sun, Y.-Y., Wang, X.-C., Chang, Y.-W., Hsu, C.-L., Huang, H.-C.* and Juan, H.-F.* “single-cell RNA-seq analysis reveals the effect of tunneling nanotubes (TNTs)-mediated transfer under hypoxic stress in neuroblastoma” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 19-20, 2022. (Best Poster Award)
  26. Chang, Y.-W., Wang, X.-C., Sun, Y.-Y., Chang, T.-Y., Huang, H.-C.* and Juan, H.-F.* “Tunneling nanotube-mediated intercellular transfer rescues neuroblastoma cells from hypoxic stress” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 19-20, 2022. (1st Prize)
  27. Tseng, T.-Y., Hsu, C.-L., Ou, D.-L., Hsu, C., Huang, C.-T., Huang, H.-C.* and Juan, H.-F.* “Single-cell multi-omics analysis reveals transcriptional regulatory network of CD8+ T cell exhaustion under anti-PD-1 resistance in hepatocellular carcinoma and predicts potential small molecular drug to avoid T cell dysfunction” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 19-20, 2022. (Best Poster Award)
  28. Chen, K.-P., Hsu, C.-L., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* “BIC: a database for the transcriptional landscape of bacteria in cancer” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 19-20, 2022. (Best Poster Award)
  29. Yu, P.-C., Kao, Y.-C., Huang, C.-T., Chang, H.-Y., Huang, C.-H., Huang H.-C.*, Juan, H.-F.* ” Combination therapy of targeting mTOR signaling pathway and mitochondria respiration for high-risk neuroblastoma” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 19-20, 2022.
  30. Hsieh, C.-H., Huang, C.-T., Chang, K.-J., Liu, J.-U., Huang, H.-C.* and Juan, H.-F.* “Targeting drug-induced transcriptional mechanisms to guide effective cancer therapy” Multiomics and Precision Medicine Joint Conference, Taipei, Taiwan, Nov. 19-20, 2022. (Honorable Award)
  31. Lin-Yan, X.-Q., Chang, Y.-W., Huang, H.-C.* and Juan, H.-F.* “A mitochondria-plasma membrane fusion machinery regulates mitochondrial ATP synthase translocation to the cell surface” 36th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27, 2022. (Best Poster Award)
  32. Wang, X.-C., Chang, Y.-W., Chang T.-Y., Sun Y.-Y., Huang, H.-C.* and Juan, H.-F.* “Tunneling nanotube-mediated intercellular transfer rescues neuroblastoma cells from hypoxic stress” 36th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27, 2022.
  33. Chang, K.-J., Huang, C.-T., Hsieh, C.-H., Huang, H.-C.,* and Juan, H.-F.* “Targeting afatinib-induced transcriptional responses to inform combination therapy for lung cancer” 36th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-27, 2022.
  34. Liu, J.-Y., Huang, C.-T., Hsieh, C.-H., Huang, H.-C.*, and Juan, H.-F.* “Investigating neratinib-induced cholesterol biosynthesis as a resistance pathway for combinatorial therapy in breast cancer” 36th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-27, 2022.
  35. Tu, Y.-H., Juan, H.-F.*, Huang, H.-C.* “Context-dependent gene regulatory network explains regulation dynamics and cell trajectories using unspliced transcripts” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022. (Selected oral Presentation)
  36. Tseng, T.-Y., Yu, W.-H., Huang, C.-T., Huang, H.-C.*, Juan, H.-F.* (2022) “Drug Discovery for Triple-negative Breast Cancer by Integrative Single-cell RNA Sequencing and Perturbational Gene-expression Data” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022. (Selected oral Presentation)
  37. Ou, P.-Y., Juan, H.-F., Huang, H.-C., Hsu, C.-L.* “To investigate the heterogeneity of exhausted T cells across tumor types by integrating single-cell RNA-seq data” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022. (Best Poster Award)
  38. Li, A., Chen, J.-Y., Hsu, C.-L., Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2022) “Single-cell transcriptome reveals a theragnostic signature for post-COVID-19 pulmonary fibrosis” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022. (Best Poster Award)
  39. Wen, J.-H., Hsieh, C.-Y., Huang, J.-H., Juan, H.-F.*, Huang, H.-C.* “Gene expression dispersion infers COVID-19 severity from single-cell transcriptomic data” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022. (Best Poster Award)
  40. Chen, K.-P., Hsu, C.-L., Huang, H.-C.*, Juan, H.-F.* (2022) “The transcriptional landscape of bacteria in cancers” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022. (Best Poster Award)
  41. Yu, W.-H., Oyang, Y.-J., Juan, H.-F.* Huang, H.-C.* (2022) “Decoding gene co-expression networks of individual cells from single-cell transcriptome” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022.
  42. Lin, C.-Y., Juan, H.-F.*, Huang, H.-C.* (2022) “Characterization of tumor-associated microbial and transcriptomic signatures in lung adenocarcinoma” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022.
  43. Chen, K.-Y., Chen K.-P., Huang, H.-C.*, Juan, H.-F.* (2022) “Characterization of the microbiome in the lower respiratory tract of critically ill COVID-19 patients with metatranscriptomic and human transcriptomic data” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022. (Best Poster Award)
  44. Chen, J.-Y., Huang, C.-H., Huang, H.-C.*, Juan, H.-F.* (2022) “Exploring therapy for COVID-19-related heart complications by integrating network-based drug repurposing and single nucleus RNA sequencing” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022.
  45. Huang, C.-H.#, Yu, P.-C.#, Kuo, C.-J., Liang, P.-H., Wang, L.H.-C., Pan, M. Y.-C., Chang, S.-Y. Chao, T.-L., Ieong, S., Fang, J.-T., Huang, H.-C.*, Juan, H.-F.* (2022) “Drug repurposing for the identification of compounds with anti-SARS-CoV-2 capability via multiple targets” International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022), March 12-13, 2022.
  46. Chang, Y.-W., Wang, C.-C., Yin, C.-F., Wu, C.-H., Huang, H.-C.*, Juan, H.-F.* (2021) “Quantitative phosphoproteomics reveals ectopic ATP synthase on mesenchymal stem cells to promote tumor progression via ERK/c-Fos pathway activation” HUPO ReCONNECT 2021, online, Nov. 15-19, 2021.
  47. Hsu, C.-L., Yin, C.-F., Chang, Y.-W., Fan, Y.-C., Lin, S.-H., Wu, Y.-C., Huang, H.-C.*, Juan, H.-F.* (2021) “LncRNA SNHG1 regulates neuroblastoma cell fate via interactions with HDAC1/2” The Taiwan Society for Biochemistry and Molecular Biology Autumn Camp, online, Oct. 16-17, 2021.
  48. Chang, Y.-W., Wang, C.-C, Yin, C.-F., Wu, C.-H., Huang, H.-C.*, Juan, H.-F.* (2021) “Quantitative phosphoproteomics reveals ectopic ATP synthase on mesenchymal stem cells to promote tumor progression via ERK/c-Fos pathway activation” The Taiwan Society for Biochemistry and Molecular Biology Autumn Camp, online, Oct. 16-17, 2021.
  49. Wang, W.-H., Tsai, S.-Y., Hsieh, C.-H., Cheung, C. H. Y., Huang, H.-C.*, Juan, H.-F.* (2021) “Integrative proteomics and phosphoproteomics reveal that mitochondrial division inhibitor 1 enhances serine synthesis and dephosphorylates PSMA3-S250 in neuroblastoma” 10th Asia-Oceania Human Proteome Organization (AOHUPO) Congress, Busan, Korea, June 30 - July 2, 2021.
  50. Chen, K.-P., Hsu, C.-L., Huang, H.-C.*, Juan, H.-F.* (2021) “Identification of the cancers-associated microbiome with microRNA-seq” 2021 Annual Conference of Taiwan Microbiota Consortium (2021 ACTMC), Taipei, Taiwan, April 24, 2021.
  51. Chang, Y.-W., Yang, T. T., Chen, M.-C., Liaw, Y-g., Yin, C.-F., Huang, T.-Y., Hou, J.-T., Hung, Y.-H., Hsu, C.-L., Huang, H.-C. *, Juan, H.-F.* “Mitochondrial ATP Synthase Trafficking along Microtubules to the Cell Surface Depends on KIF5B and DRP1” 2020 Annual Meeting of Taiwan Society for Mitochondrial Research and Medicine, Hualien, Taiwan, Nov. 14-15, 2020. (Honorable Award)
  52. Hsieh, C.-H., Huang, C.-T., Cheng, Y.-S., Chung, Y.-H., Liu, Y.-L., Hsu, C.-H., Hsu, W.-M., Huang, H.-C.*, Juan, H.-F.* “Identification of a new phosphoglycerate dehydrogenase inhibitor to reprogram serine/glycine metabolism for neuroblastoma therapy” 2020 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Taina, Taiwan, Oct. 30- Nov. 1, 2020. (Excellent Poster Award)
  53. Wang, W.-H., Tsai, H.-H., Hsieh, C.-H., Huang, C.-T., Cheung, C. H. Y., Huang, H.-C., Juan, H.-F.* “Mitochondrial Division Inhibitor 1 induced serine biosynthesis via regulation of PSMA3-S250 in neuroblastoma” 2020 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Taina, Taiwan, Oct. 30- Nov. 1, 2020.
  54. Chang, H.-C., Huang, H.-C., Juan, H.-F.*, Hsu, C.-L* (2019) “Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation” Joint 30th International Conference on Genome Informatics& Australasian Bioinformatics and Computational Biology Society (GIW/ABACBS 2019), Sydney, Australia, Dec. 9-11, 2019. (Oral Presentation)
  55. Cheung, C.H.Y., Hsu, C.-L., Lin, T.-Y., Chen, W.-T., Wang, Y.-C., Huang, H.-C.*, and Juan, H.-F.* “Quantitative Proteomics and Phosphoproteomics Analyses Reveal the Regulatory Roles of ZNF322A in lung cancer” 2019 Multiomics and precision medicine joint conference, Tainan, Taiwan, Dec. 07-08, 2019. (Young scientist oral presentation competition - 2nd place)
  56. Lee, W.-H., Chen, K.-P., Wang, K., Huang, H.-C.*, and Juan, H.-F.* “Characterizing the cancer-associated microbiome with small RNA sequencing data” 2019 Multiomics and precision medicine joint conference, Tainan, Taiwan, Dec. 07-08, 2019. (Poster Award)
  57. Hsieh, C.-H., Cheung, C.H.-Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C*. and Juan, H.-F.* “Quantitative Proteomics of Th-MYCN Transgenic Mice Reveals Aurora Kinase Inhibitor Altered Metabolic Pathways and Enhanced ACADM To Suppress Neuroblastoma Progression” 2019 Multiomics and precision medicine joint conference, Tainan, Taiwan, Dec. 07-08, 2019. (Poster Award)
  58. Kao, Y.-C., Chang, N.-W., Lai, C.P., Huang, H.-C.*, and Juan, H.-F.* ” The role of ectopic ATP synthase in cell-to-cell communication by extracellular vesicles” 2019 The Taiwan Society for Biochemistry and Molecular Autumn Camp, New Taipei City, Taiwan, Nov. 15-17, 2019.
  59. Chang, Y.-W., Hou, J.-T., Liaw, Y-g., Huang, T.-Y., Chen, M.-C., Yin, C.-F., Hung, Y.-H., Hsu, C.-L., Huang, H.-C.*, and Juan, H.-F.* “Mitochondrial ATP synthase trafficking toward the cell surface depending on KIF5B and Drp1 to serve as a new target for overcoming chemoresistance” 2019 Annual Meeting of Taiwan Society for Mitochondrial Research and Medicine, Taipei, Taiwan, Nov. 09, 2019. (Honorable Award)
  60. Wang, W. H., Hsu, C. L., Huang, H.-C.*, and Juan, H.-F.* “Cyclic stretch-induced biological functions by phosphoproteomics profiling” 2019 Annual Meeting of Taiwan Society for Mitochondrial Research and Medicine, Taipei, Taiwan, Nov. 09, 2019. (Honorable Award)
  61. Juan, H.-F.* and Huang, H.-C.* “Targeting Trafficking of Mitochondrial Key Energy Protein for Cancer Therapy” 16th conference of The Asian Society for Mitochondrial Research and Medicine (ASMRM2019), Fukuoka city, Japan, Oct. 3-5, 2019 (E-poster)
  62. Huang, C.-T., Hsieh, C.-H., Lee, W.-C., Liu, Y.-L., Yang, T.-S., Hsu, W.-M., Oyang, Y.-J., Huang, H.-C.* and Juan, H.-F.* “Therapeutic targeting of non-oncogene dependencies in high-risk neuroblastoma ” The 78th Annual Meeting of the Japanese Cancer Association, Kyoto, Japan, Sep. 26-28, 2019. (Travel Grant Award)
  63. Hsieh, C.-H., Cheung, C. H. Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C.* and Juan, H.-F.* “Targeting aurora kinases reduces neuroblastoma progression by altering the metabolic pathways via enhancing ACADM” The 78th Annual Meeting of the Japanese Cancer Association, Kyoto, Japan, Sep. 26-28, 2019. (Travel Grant Award)
  64. Kao, Y.-C., Chang, N.-W., Chang, Y.-W., Lai, C. P., Huang, H.-C. and Juan, H.-F.* “Ectopic ATP synthase induces extracellular vesicle release for cell-to-cell communications” The 8th Congress of the International Society for Extracellular Vesicles (ISEV2019), Kyoto, Japan, April 24-28, 2019.
  65. Wang, C.-C., Chang, Y.-W., Wu, C.-H., Cheung, C. H. Y., Lee, J.-L., Huang, H.-C.* and Juan, H.-F.* “Mesenchymal stem cells-derived microenvironment promote lung cancer cell progression via c-Fos S374 phosphorylation in MAPK signaling pathway” 34th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24, 2019. (Best Poster Award)
  66. Tsai, H.-H., Wang, W.-H., Hou, J.-T., Hsieh, C.-H., Chang, Y.-W., Huang, H.-C.* and Juan, H.-F.* “Investigation of molecular mechanism in mitochondria fission leading ATP synthase toward cell surface” 34th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24, 2019. (Best Poster Award)
  67. Yang, F.-M., Kuo, I.-Y., Juan, H.-F., Wang, Y.-C.*. 2019 Rab37-mediated IL-6 secretion in the polarization of macrophages. The 34th joint annual conference of biomedical sciences. (Best Poster Award).
  68. Lee, W.-H., Chen, K.-P., Huang, H.-C.* and Juan, H.-F.* “Exploring cancer-associated microbiome characteristics using large-scale patient small RNA sequencing data” 34th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24, 2019.
  69. Chang, N.-W., Kao, Y.-C., Chang, Y.-W., Lai, C. P., Huang, H.-C.* and Juan, H.-F.* “The function of ectopic ATP synthase in extracellular vesicles under serum deprivation” 34th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24, 2019.
  70. Liaw, Y-g., Chang, Y.-W., Hung, Y.-H., Huang, H.-C.* and Juan, H.-F.* “Live-cell imaging of ectopic ATP synthase trafficking” 34th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24, 2019.
  71. Cheung, H. Y. C., Hsu, C.-L., Tsuei, C.-Y., Kuo, T.-T., Huang, C.-T., Wu, H.-Y., Hsu, C.-C. Chung, Y.-H., Huang, H.-C.* and Juan, H.-F.* “MYCN-mediated purine biosynthesis enhances cancer metabolism via MTHFD2 and PAICS in neuroblastoma” 2017 Taiwan Proteomics Society (TPS) Annual Meeting, Taichung, Taiwan, Nov. 17, 2018. (1st Prize Poster Award)
  72. Wang, W.-H., Hsu, C.-L., Huang, H.-C.* and Juan, H.-F.* “Phosphoproteomics reveals cyclic stretch induces microtubule rearrangement, changes cell alignment and disrupts mitochondrial dynamics in lung cells” 2018 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Chitou, Taiwan, Nov. 9-11, 2018.
  73. Hsieh, C.-H., Huang, C.-T., Chung, Y.-H., Liu, Y.-L., Yang, T.-S., Chien, C. Y., Cho, C.-C., Hsu, C.-H., Hsu, W.-M., Huang, H.-C.* and Juan, H.-F.* “Targeting a key enzyme in serine/glycine metabolism for neuroblastoma therapy” 2018 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Chitou, Taiwan, Nov. 9-11, 2018. (Poster Award)
  74. Cheung, H. Y. C., Hsu, C.-L., Tsuei, C.-Y., Kuo, T.-T., Huang, C.-T., Wu, H.-Y., Hsu, C.-C. Chung, Y.-H., Huang, H.-C.* and Juan, H.-F.* “MYCN-mediated purine biosynthesis enhances cancer metabolism via MTHFD2 and PAICS in neuroblastoma” The 77th Annual Meeting of the Japanese Cancer Association, Osaka, Japan, Sep. 27-29, 2018. (Travel Grant Award)
  75. Chang, Y.-W., C.-L. Hsu, Chen, X.-J., Huang, H.-C.* and Juan, H.-F.* “Ectopic ATP synthase blockade overcomes gefitinib-resistance via CK2a/TOP2A/GAS5 axis” The 77th Annual Meeting of the Japanese Cancer Association, Osaka, Japan, Sep. 27-29, 2018. (Travel Grant Award)
  76. Hsieh, C.-H., Huang, C.-T., Chung, Y.-H., Liu, Y.-L., Yang, T.-S., Chien, C. Y., Cho, C.-C., Hsu, C.-H., Hsu, W.-M., Huang, H.-C.* and Juan, H.-F.* “Targeting a key enzyme in serine/glycine metabolism for neuroblastoma therapy” Advances in Neuroblastoma Research 2018 (ANR2018), San Francisco, USA, May 9th-12th, 2018. (Travel Award)
  77. Tang, C.-W., Chang, Y.-W., Hsu, C.-L., Ye, S.-P., Huang, H.-C.* and Juan, H.-F.* “Targeting the E2F1/GAS5/p53 axis as a potential therapeutic strategy for drug-resistant lung cancer” 33th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 24-25, 2018. (Best Poster Award)
  78. Cheung, H. Y. C., Hsu, C.-L., Tsuei, C.-Y., Kuo, T.-T., Huang, C.-T., Huang, H.-C.* and Juan, H.-F.* “ MYCN mediates metabolic enzymes MTHFD2 and PAICS during neuroblastoma cell progression” 33th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 24-25, 2018. (Poster Award)
  79. Lee, W.-C., Hsieh, C.-H., Huang, C.-T., Liu, Y.-L., Yang, T.-S., Hsu, W.-M., Huang, H.-C.* and Juan, H.-F.* “A gene expression-based strategy identifies the anthelminthic drug niclosamide for high-risk neuroblastoma therapy” 33th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 24-25, 2018. (Poster Award)
  80. Kao, Y.-C., Chang, Y.-W., Lai, C. P., Huang, H.-C.* and Juan, H.-F.*“ Ectopic ATP synthase on extracellular vesicles” 33th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 24-25, 2018. (Poster Award)
  81. Hou, J.-T., Huang, T.-Y., Chen, M.-C., Chang, Y.-W., H.-H., Tsai, Huang, H.-C.* and Juan, H.-F.* “Trafficking of ectopic ATP synthase” 33th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 24-25, 2018.
  82. Lin, S.-H., Yang, T.-W., Sahu, D., Huang, H.-C.* and Juan, H.-F.* “Long Non-coding RNA SNHG1 in the regulation of neuroblastoma tumorigenesis” 33th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 24-25, 2018.
  83. Cheng, P.-Y., Hsu, C.-L., Chen, K.-P., Juan, H.-F.* and Huang, H.-C.* “Web-based visualization system for individual gene variants and their associated diseases” 33th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 24-25, 2018.
  84. Yin, C.-F., Kao, S.-C., Hsu, C.-L., Huang, H.-C.*, Juan, H.-F.* “Multi-omics analysis reveals dynamic heat shock protein 27 phosphorylation in tanshinone IIA-induced cell death” 2017 TPS Annual Meeting, Taipei, Taiwan, Nov. 25, 2017. (Best Poster Award)
  85. Chang, Y.-W., Wu, C.-H., Cheung, H. Y. C., Wang, C.-C., Lee, J.-L., Huang, H.-C.*, Juan, H.-F.* “Integrative transcriptomics and phosphoproteomics analyses reveal the role of mesenchymal stem cell in tumor microenvironment” 2017 TPS Annual Meeting, Taipei, Taiwan, Nov. 25, 2017.
  86. Chang, Y.-W., Hsu, C.-L., Chen, X.-J., Huang, H.-C.*, Juan, H.-F.* “ATP synthase blockade overcomes gefitinib-resistance though TOP2a/GAS5/p53 axis in lung cancer cells” 2017 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Kaohsiung, Taiwan, Nov. 17-19, 2017. (Best Poster Award)
  87. Cheung, H. Y. C., Hsu, C.-L., Chen, K.-P., Chong, S.-T., Huang, H.-C.*, Juan, H.-F.* “MCM2-regulated functional networks in lung cancer by multi-dimensional proteomic approach” 2017 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Kaohsiung, Taiwan, Nov. 17-19, 2017.
  88. Yin, C.-F., Kao, S.-C., Hsu, C.-L., Huang, H.-C.*, Juan, H.-F.* “Multilayer omics identify phosphorylation of heat shock protein 27 at serine 82 is crucial for tanshinone IIA-induced cell death” 2017 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Kaohsiung, Taiwan, Nov. 17-19, 2017.
  89. Huang, C-T., Hsieh, C.-H., Chung, Y.-H. Oyang, Y.-J., Huang, H.-C.*, Juan, H.-F.* (2017) “Combinatorial therapeutic discovery using recurrent perturbation−gene relationships” The 76th Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, Sep. 28-30, 2017. (Travel Grant Award)
  90. Hsieh, C.-H, Huang, C-T., Cho, C.-C., Chien, C.-Y., Hsu, C.-H., Huang, H.-C.*, Juan, H.-F.* (2017) “Reprograming serine metabolism by a new phosphoglycerate dehydrogenase inhibitor for neuroblastoma therapy” The 76th Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, Sep. 28-30, 2017. (Travel Grant Award)
  91. Yu, W.-H., Juan, H.-F., Huang, H.-C.* “Stratification of lncRNA modulation networks in cancer” The 76th Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, Sep. 28-30, 2017.
  92. Cheung, H. Y. C., Hsu, C.-L., Chen, K.-P., Chong, S.-T., Huang, H.-C., Juan, H.-F.* (2017) “Integrative phosphoproteome and proteome reveal key protein phosphorylation by MCM2 in lung cancer” Cascadia Proteomics Symposium, Seattle, USA, July 17-18, 2017. (3rd Prize)
  93. Lin, M.-C., Juan, H.-F., Lou P.-J., and Huang, M.-C.* “C1GALT1 promotes EGFR activity and is a potential therapeutic target for head and neck squamous cell carcinoma” AMP Global Congress on Molecular Pathology, April 3-5, 2017 in Berlin, Germany (Global Young Investigation Poster Award)
  94. Chung, Y.-H., Hsieh, C.-H., Huang, C.-T., Liu, Y.-L.*, Yang, T.-S., Cheung, H.-Y., Hsu, W.-M.*, Huang, H.-C.* and Juan, H.-F.* “A combination therapy for high-risk neuroblastoma” 32th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-26, 2017. (Poster Award)
  95. Huang, T.-Y., Chen, M.-C., Hung, Y.-H., Huang, H.-C.* and Juan, H.-F.* “The role of microtubules in the trafficking of ectopic ATP synthase” 32th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-26, 2017. (Poster Award)
  96. Hung, Y.-H., Chen, M.-C., Huang, T.-Y., Huang, H.-C.* and Juan, H.-F.* “Trafficking of ATP synthase to cell surface: mitophagy-dependent or independent?” 32nd Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-26, 2017.
  97. Chen, M.-C., Huang, T.-Y., Cheng, C.-Y., Hung, Y.-H., Huang, H.-C.*and Juan, H.-F.* “Trafficking of Ectopic ATP Synthase via Mitochondrial Dynamics” 32th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-26, 2017.
  98. Yang, T.-Z. , Divya Sahu, Huang, H.-C.* and Juan, H.-F.* “The role of long non-coding RNA SNHG1 in neuroblastoma” 32th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-26, 2017.
  99. Wu, C.-H., Cheung, C. H. Y., Chang, Y.-W., Lee, J.-L., Huang, H.-C.* and Juan, H.-F.* “Phosphoproteomics reveals key phospho-signalings in lung cancer stem cell properties” 32nd Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 25-26, 2017.
  100. Cheung, H. Y. C., Hsu, C.-L., Chen, K.-P., Chong, S.-T., Huang, H.-C., Juan, H.-F.* “DNA replication licensing factor MCM2 promotes lung cancer cell proliferation through regulation of HMGA1 phosphorylation” The 75th Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, October 6-8, 2016. (Travel Grant Award)
  101. Hsu, C.-L., Chen, Y.-P., Huang, H.-C., Juan, H.-F.* “Computational methods for identification of lncRNAs interacting with MYCN in neuroblastoma” The 75th Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, October 6-8, 2016. (Travel Grant Award)
  102. “DynaPho: a web tool for inferring the signaling dynamics from time-series phosphoproteomics data” 15th Human Proteome Organization World Congress (HUPO 2016), Taipei, Taiwan, September 18-22, 2016.
  103. Cheung, C. H. Y., Hsu, C.-L., Chen, K.-P., Chong, S.-T., Huang, H.-C., Juan, H.-F.* “Integrated analysis of phosphoproteome and global proteome reveals key protein phosphorylation by MCM2 in lung cancer cells” 15th Human Proteome Organization World Congress (HUPO 2016), Taipei, Taiwan, September 18-22, 2016.
  104. Hsieh, C.-H.#, Hou, C.-L.#, Huang, C.-T., Cheung, H.-Y. C., Chen, K.-P., Hsu, C.-L., Liu, Y.-L., Yang, T.-S., Yeh, T.-T., Chen, S.-F., Hsu, W.-M., Huang, H.-C., and Juan, H.-F.* “Phamacoproteomics reveals the pan-Aurora kinase inhibitor tozasertib as a potential therapeutic drug for Mycn-amplified neuroblastoma” 15th Human Proteome Organization World Congress (HUPO 2016), Taipei, Taiwan, September 18-22, 2016.
  105. Wang, W.-H., Hsu, C.-L., Huang, H.-C., and Juan, H.-F.* “Quantitative phosphoproteomic analysis reveal cyclic stretch-induced pathways in human lung cancer and normal cells” 15th Human Proteome Organization World Congress (HUPO 2016), Taipei, Taiwan, September 18-22, 2016.
  106. Hou, C.-L.#, Hsieh, C.-H.#, Huang, C.-T., Cheung, H.-Y. C., Chen, K.-P., Hsu, C.-L., Liu, Y.-L., Yang, T.-S., Yeh, T.-T., Chen, S.-F., Hsu, W.-M., Huang, H.-C., and Juan, H.-F.* “The pan-Aurora kinase inhibitor tozasertib as a repurposed drug for Mycn-amplified neuroblastoma” 31th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27, 2016. (#equal contribution) (Poster Award)
  107. Wang, W.-H., Huang, H.-C., and Juan, H.-F.* “Quantitative phosphoproteomic analysis reveal cyclic stretch-induced pathways in human lung cancer cells” 31th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27, 2016. (Poster Award)
  108. Hsieh, C.-H., Hou, C.-L., Huang, C.-T., Hsu, W.-M., Huang, H.-C., and Juan, H.-F.* “The role of PHGDH in high-risk neuroblastoma” 31th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27, 2016.
  109. Cheng, N., Huang, H.-C., and Juan, H.-F.* “The trafficking pathways of ectopic ATP synthase from mitochondria to cell surface” 31th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27, 2016.
  110. Chen, X.-J., Chang, H.-Y., Huang, H.-C., and Juan, H.-F.* “Temporal phosphoproteome dynamics reveals the role of ATP synthase inhibitor citreoviridin in gefitinib-resistant lung cancer cells” 31th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27, 2016.
  111. Lin, T.-Y., Chen, W.-T., Lin, L.-L., Huang, H.-C., and Juan, H.-F.* “Integrative quantitative proteomic and phosphoproteomic analyses to reveal the regulatory role of ZNF322A” BIT2016 and Kyutech-NYMU Joint Symposium for Biomedical Informatics & Biotechnology, Taipei, Taiwan, March 3-4, 2016. (Poster Competition 1st Prize)
  112. Chen, Y.-P., Hsu, C.-L., Huang, H.-C., and Juan, H.-F.* “Computational methods for identification of lncRNAs interacting with MYCN in neuroblastoma” BIT2016 and Kyutech-NYMU Joint Symposium for Biomedical Informatics & Biotechnology, Taipei, Taiwan, March 3-4, 2016. (Poster Competition 3rd Prize)
  113. Tu, Y.-H., Juan, H.-F. and Huang, H.-C.* “Identification of cell states using super-enhancer RNA” BIT2016 and Kyutech-NYMU Joint Symposium for Biomedical Informatics & Biotechnology, Taipei, Taiwan, March 3-4, 2016. (Poster Competition Honorable Mention)
  114. Hsu, C.-L., Chang, H.-Y., Chang, J.-Y., Huang, H.-C.*, and Juan, H.-F.* (2015) “Unveiling MYCN regulatory network in nueroblastoma by integrative analysis of heterogeneous genomics data” 2015 Asia-Pacific Symposium of Neuroblastoma, Taipei, Taiwan, November 14, 2015. (Best Poster Award)
  115. Sahu, D., Hsu, C.-L., Juan, H.-F., and Huang, H.-C.* (2015) “lncRNA co-expression network in neuroblastoma” 2015 Asia-Pacific Symposium of Neuroblastoma, Taipei, Taiwan, November 14, 2015. (Best Poster Award)
  116. Huang, C.-T., Oyang, Y.-J., Huang, H.-C.*, and Juan, H.-F.* (2015) “Integrative genomics analyses reveal aberrant nucleotide and amino acid metabolism in high-risk neuroblastoma” 2015 Asia-Pacific Symposium of Neuroblastoma, Taipei, Taiwan, November 14, 2015.
  117. Yin, C.-F., Kao, S.-C., Lin, L.-L., Huang, H.-C.*, and Juan, H.-F.* (2015) “Phosphoproteome dynamics unveil key response signaling in Tanshinone IIA-treated gastric cancer cells” 2015 TPS Annual Meeting, Taoyuan, Taiwan, November 13-14, 2015.
  118. Cheung, H. Y. C., Chong, S.-T., Chen, K.-P., Huang, H.-C.*, and Juan, H.-F.* (2015) “Integrative quantitative proteomics and phosphoproteomics reveal key protein phosphorylation by MCM2 in lung cancer” 2015 TPS Annual Meeting, Taoyuan, Taiwan, November 13-14, 2015. (Best Poster Award)
  119. Sahu, D., Hsu, C.-L., Juan, H.-F., and Huang, H.-C.* (2015) “lncRNAs co-expression network in neuroblastoma” The 3rd The Emerging Information and Technology Association (EITA)-Bio Conference (the EITA-Bio 2015), Taipei, Taiwan, October 24-25. (Best Poster Award)
  120. Cheung, H. Y. C., Chong, S.-T., Chen, K.-P., Huang, H.-C.*, and Juan, H.-F.* (2015) “Integrative quantitative proteomics and phosphoproteomics reveal key protein phosphorylation by MCM2 in lung cancer” The 3rd The Emerging Information and Technology Association (EITA)-Bio Conference (the EITA-Bio 2015), Taipei, Taiwan, October 24-25.
  121. Yin, C.-F., Kao, S.-C., Lin, L.-L., Huang, H.-C.*, and Juan, H.-F.* (2015) “Phosphoproteome dynamics unveil key response signaling in Tanshinone IIA-treated gastric cancer cells” The 3rd The Emerging Information and Technology Association (EITA)-Bio Conference (the EITA-Bio 2015), Taipei, Taiwan, October 24-25.
  122. Huang, C.-T., Oyang, Y.-J., Huang, H.-C.* and Juan, H.-F.* (2015) “MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma” The 74rd Annual Meeting of the Japanese Cancer Association, Nagoya, Japan, October 8-11. (Travel grant)
  123. Tsuei, C.-Y., Kuo, T.-T., Hsu, C.-L., Huang, C.-T., Chang, H.-Y., Chang, J.-Y., Hsieh, C.-H., Huang, H.-C.* and Juan, H.-F.* “Integrative omics analysis reveals the importance of one-carbon metabolism in neuroblastoma progression” The 20th Biophysics Conference, Taipei, Taiwan, May 11-13, 2015.
  124. Kao, S.-C., Hu, C.-W., Lin, L.-L., Huang, H.-C.* and Juan, H.-F.* “Temporal phosphoproteome dynamics reveal response pathways of Tanshinone IIA in gastric cancer AGS cells” 30th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22, 2015. (Poster Award)
  125. Kuo, T.-T., Tsuei, C.-Y., Huang, C.-T., Hsu, C.-L., Chang, H.-Y., Huang, H.-C.* and Juan, H.-F.* “The role of MTHFD2 in neuroblastoma progression” 30th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22, 2015. (Poster Award)
  126. Wei-Ting Chen, Hu, C.-W., Lin, L.-L., Hsu, C.-L., Huang, H.-C.* and Juan, H.-F.* “Quantitative phosphoproteome analysis reveals the signaling pathways downstream of transcription factor ZNF322A in human lung cancer cells. 30th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22, 2015. (Poster Award)
  127. Jen, J., Liao, S.-Y., Chen, H.-T., Lo, F.-Y., Su, W.-C., Salgia, R., Juan, H.-F., Wang, Y.-C.* “Oncoprotein ZNF322A transcriptionally deregulates alpha-adducin, cyclin D1 and p53 to promote tumor growth and metastasis in lung cancer” 30th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22, 2015. (Poster Award)
  128. Liao, S.-Y., Lin, C.-H., Hu, C.-W., Chiang, C.-W., Juan, H.-F., Wang, Y.-C.* “GSK3b/CK1/FBW7 signaling promotes ZNF322A oncoprotein degradation in lung cancer” 30th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22, 2015. (Oral Presentation 1st Prize Award)
  129. Chong, S.-T., Hu, C.-W., Lin, L.-L., Huang, H.-C.* and Juan, H.-F.* “Quantitative phosphoproteomic analysis uncovers the regulatory networks by of minichromosome maintenance protein 2 in lung cancer cells” 30th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22, 2015.
  130. Tsuei, C.-Y., Kuo, T.-T., Hsu, C.-L., Huang, C.-T., Chang, H.-Y., Chang, J.-Y., Huang, H.-C.* and Juan, H.-F.* “Integrated analyses of ChIP-seq and gene expression profiles reveal E2F3 and PAICS as the MYCN downstream targets in neuroblastoma” 30th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22, 2015.
  131. Jen, J., Lin, L.-L. Chen, H.-T., Liao, S.-Y., Lo, F.-Y., Tang, Y.-A., Su, W.-C., Salgia, R., Hsu, C.-L. Huang, H.-C., Juan, H.-F., Wang, Y.-C.* “Oncoprotein ZNF322A transcriptionally deregulates alpha-adducin, cyclin D1 and p53 to promote tumor growth and metastasis in lung cancer.” The Twenty-second Symposium on Recent Advances in Cellular and Molecular Biology, Kenting, Taiwan, Feb. 4-6, 2015. (2nd Prize Award of Chien-Tien Hsu Foundation)
  132. Liao, S.-Y., Hu, C.-W., Chiang, C.-W., Juan, H.-F., Wang, Y.-C.* “GSK3b/CK1/FBW7 signaling promotes ZNF322A oncoprotein degradation in lung cancer” The Twenty-second Symposium on Recent Advances in Cellular and Molecular Biology, Kenting, Taiwan, Feb. 4-6, 2015.
  133. Huang, C.-T., Oyang, Y.-J., Huang, H.-C.* and Juan, H.-F. “MicroRNA-mediated Networks Underlie Immune Response Regulation in Papillary Thyroid Carcinoma” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014. (Poster Award)
  134. Yu, W.-H., Wang, Y.-C., Juan, H.-F. and Huang, H.-C.* “Network-based Identification and Stratification of lncRNA Modulation Network with ceRNA Hypothesis” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014. (Poster Award)
  135. Lu, P.-C., Hsu, C.-L., Wu, C.-H., Juan, H.-F. and Huang, H.-C.* “Lncin: Identifying lncRNA-modulated Protein–protein Interaction Networks” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014. (Poster Award)
  136. Chen, W.-T., Hu, C.-W., Lin, L.-L., Huang, H.-C.* and Juan, H.-F. “Quantitative Phosphoproteome Analysis of ZNF322A in Human Lung Adenocarcinoma A549 Cells” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014.
  137. Wang, J.-K., Hsu, C.-L., Huang, H.-C.* and Juan, H.-F. “DynaPho: Inferring Signaling Dynamics from Phosphoproteomics Data” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014. (Poster Award)
  138. Chen, K.-P., Hsu, C.-L., Oyang, Y.-J., Huang, H.-C.* and Juan, H.-F. “Exploring the Relations Between Spinal Muscular Atrophy and Amyotrophic Lateral Sclerosis by Comparing Condition-Specific Protein Interaction Networks” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014.
  139. Kao, S.-C., Hu, C.-W., Lin, L.-L., Huang, H.-C.* and Juan, H.-F. “Temporal Phosphoproteome Dynamics Reveal Response Pathways of Tanshinone IIA in Gastric Cancer AGS Cells” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014.
  140. Chong, S.-T., Hu, C.-W., Lin, L.-L., Huang, H.-C.* and Juan, H.-F. “Quantitative Phosphoproteomic Analysis Uncover the Regulatory Networks by Minichromosome Maintenance Protein 2 in Lung Cancer Cells” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014.
  141. Cheung, C. H. Y., Hu, C.-W., Huang, H.-C.*, Juan, H.-F. “To Reveal the Roles of Phosphorylated Nuclear Membrane Protein Lamin B1 in Lung Cancer” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014.
  142. Chang, H.-Y., Huang, T.-C., Chen, N.-N., Huang, H.-C.*, Juan, H.-F. “Combination Therapy Targeting Ectopic ATP Synthase and 26S Proteasome Induces ER Stress in Breast Cancer Cells” TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014. (Poster Award)
  143. Lu, P.-C., Hsu, C.-L., Wu, C.-H., Juan, H.-F. and Huang, H.-C.* “Lncin: Identifying lncRNA-modulated Protein–protein Interaction Networks” International Symposium on Evolutionary Genomics and Bioinformatics 2014 (ISEGB 2014), Tainan, Taiwan, (Best Poster Award)
  144. Hsu, C.-L., Chang, H.-Y., Chang, J.-Y., Huang, H.-C.*, and Juan, H.-F.* (2014) “MicroRNA-mediated feed-forward regulation driven by MYCN in neuroblastoma” The 73rd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, September 25-27.(Travel grant)
  145. Hu, C.-W., Hsu, C.-L., Wang, Y.-C., Ishihama, Y., Ku, W.-C., Huang, H.-C.*, and Juan, H.-F.* (2014) “Temporal phosphoproteome dynamics reveal response pathways of ectopic ATP synthase blockade” The 73rd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, September 25-27. (Travel grant)
  146. Chen, C.-Y., Ho, A., Huang, H.-Y., Juan, H.-F.* and Huang, H.-C.* (2014) “Dissecting human protein-protein interaction network via phylogenetic decomposition” 15th International Conference on Systems Biology (ICSB2014), Melbourne, Australia, September 14–18. (Accepted) (Travel Award, Student bursary)
  147. Huang, H.-C.*, Hsu, C.-L., Chang, H.-Y., Chang, J.-Y., Hsu, W.-M., and Juan, H.-F.* (2014) “MicroRNA-mediated feed-forward regulation driven by mycn in neuroblastoma” (POB154) Advances in Neuroblastoma Research (ANR) Congress 2014, May 13-16, 2014, Cologne, Germany.
  148. Hu, C.-W., Hsu, C.-L., Wang, Y.-C., Ishihama, Y., Ku, W.-C., Huang, H.-C.*, and Juan, H.-F.* (2014) “Temporal phosphoproteome dynamics reveal response pathways of ectopic ATP synthase blockade” The 19th Biophysics Conference, Tainan, Taiwan, May 7-10. (Poster Award)
  149. Li, M.–H., Chang, S.-Y., Huang, T.-C., Tsai, S.-R., Lee, S.-C., Huang, H.-C., and Juan, H.-F.* (2014) “Anti-tumor effects of middle infrared radiation on breast cancer cells” (Abstract#P337) 29th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 15-16.
  150. Ho, A., Chen, C.-Y., Huang, H.-C., and Juan, H.-F.* (2014) “Phylogenetic Decomposition of Human MicroRNA regulatory network reveals coevolutionary regulation on mitochondrial pathways” (Abstract#P584) 29th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 15-16.
  151. Huang, C.-J., Yang, G.-C., Lin, C.-C., Juan, H.-F., and Huang, H.-C.* (2013) “Identification of MicroRNA and transcription factor co-regulatory modules in primary breast cancer” 11th Symposium on Bioinformatics and Systems Biology in Taiwan (BIT2013), Taipei, Taiwan, October 18-21, 2013. (Honorable Mention)
  152. Wu, Y.-H., Hu, C.-W., Chien, C.-W., Chen, Y.-J., Huang, H.-C.* and Juan, H.-F.* (2013) “Quantitative proteomic analysis of human lung tumor xenografts treated with the ectopic ATP synthase inhibitor citreoviridin” The 12th Human Proteome Organisation World Congress (HUPO 2013), Yokohama, Japan, September 14-18.
  153. Hu, C.-W., Lin, M.-H., Huang, H.-C., Ku, W.-C., Yi, T.-H., Tsai, C.-F., Chen, Y.-J., Sugiyama, N., Ishihama, Y.*, Juan, H.-F.*, and Wu, S.-H.* (2013) “Phosphoproteomic analysis of Rhodopseudomonas palustris reveals the role of pyruvate phosphate dikinase phosphorylation in lipid production” The 12th Human Proteome Organisation World Congress (HUPO 2013), Yokohama, Japan, September 14-18. (Travel Award)
  154. Hsu, C.-L., Chang, H.-Y., Chang, J.-Y., Huang, H.-C., and Juan, H.-F.* (2013) “Identification of miRNA-Mediated Feed-Forward Loops Involving MYCN as Master Regulator in Neurblastoma” The 7th Asia Young Researchers Conference on Computational and Omics Biology (AYRCOB 2013), Tokyo, Japan, September 9-10. (Travel Award)
  155. Chen, C.-Y., Ho, A., Huang, H.-Y., Juan, H.-F. and Huang, H.-C.* (2013) “Dissecting Human Protein-Protein Interaction Network via Phylogenetic Decomposition” (Abstract#165) 14th International Conference on Systems Biology (ICSB2013), Copenhagen, Demark, August 30-September 3.
  156. Hu, C.-W., Hsu, C.-L., Tsai, H.-T., Chen, C.-S., Huang, H.-C. and Juan, H.-F.* (2013) “Response Pathways to Ectopic ATP Synthase Inhibitor in Lung Cancer Cells by Combining Phosphoproteomics and Network Biology” (Abstract#167) 14th International Conference on Systems Biology (ICSB2013), Copenhagen, Demark, August 30-September 3.
  157. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Yang, P.-C., Wang, Y.-C., and Juan, H.-F.* (2013) “Ectopic ATP synthase: a Therapeutic marker on Plasma Membrane in Lung Adenocarcinoma” The 18th Biophysics Conference, Taipei, Taiwan, June 27-29. (1st prize)
  158. Hsu, C.-L., Chang, H.-Y., Chang J.-Y., Huang, H.-C. and Juan, H.-F.* (2013) “Identification of miRNA-mediated Feed-Forward Loops Involving MYCN as Master Regulator in Neuroblastoma” The 18th Biophysics Conference, Taipei, Taiwan, June 27-29. (2nd prize)
  159. Hsia, C.-R., Lin, L.-L. Huang, H.-C., Juan, H.-F.* (2013) “Explore the Molecular Mechanism of Tanshinone IIA in Gastric Cancer Cells by Quantitative Proteomic Analysis” (Abstract #27) 2013 Taiwan Proteomics Society International Conference: Recent Advances in Translational Medicine, Taipei, Taiwan, May 24-25. (3rd prize)
  160. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Yang, P.-C.*, Wang, Y.-C.*, and Juan, H.-F.* (2013) “Proteome Profiling Identifies ATP Synthase as a Therapeutic Biomarker on Plasma Membrane in Lung Adenocarcinoma” (Abstract#2) 2013 Taiwan Proteomics Society International Conference: Recent Advances in Translational Medicine, Taipei, Taiwan, May 24-25. (3rd prize)
  161. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Yang, P.-C.*, Wang, Y.-C.*, and Juan, H.-F.* (2013) “Ectopic ATP synthase: a Therapeutic Marker on Plasma Membrane in Lung Adenocarcinoma”, The Second NRPB International Symposium and Workshop for Membrane Proteins, Taipei, Taiwan, May 21-23.
  162. Hsu, K.-H., Chen, S.-K., Tseng, C.-W., Huang, H.-C., Juan, H.-F.* (2013) “RNA-seq Profiling Reveals the Role of miR-148a in Gastric Cancer AGS Cells” (Abstract#P469) 28th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24. (Excellent Poster Award)
  163. Hsia, C.-R., Lin, L.-L. Huang, H.-C., Juan, H.-F.* (2013) “Quantitative Proteomic Analysis Reveals the Mechanism of a Potential Anticancer Drug Tanshinone IIA on the Growth Inhibition of Gastric Cancer Cells” (Abstract#P461) 28th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 23-24.
  164. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Yang, P.-C., Wang, Y.-C., and Juan, H.-F. (2013) “Ectopic ATP synthase blockade suppresses lung adenocarcinoma growth by activating the unfolded protein response” 5th HOPE Meeting with Nobel Laureates, Tokyo, Japan, Feb.26-Mar. 2, 2013. (Travel Award)
  165. Hu, C.-W., Lin, M.-H., Huang, H.-C., Ku, W.-C., Yi, T.-H., Tsai, C.-F., Chen, Y.-J., Sugiyama, N., Ishihama, Y.*, Juan, H.-F.*, and Wu, S.-H.* (2012) “Phosphoproteomic analysis of Rhodopseudomonas palustris reveals the role of pyruvate phosphate dikinase phosphorylation in lipid production” The 6th IECA on Synthetic Biology with Application to Biotechnology, Taipei, Taiwan, Dec. 10-12, 2012. (Selected Oral Presentation)
  166. Yang, K.-C., Liao, H.-H., Lin, C.-C., Juan, H.-F., Huang, H.-C.* (2012) “Mirin: Identifying MicroRNA Regulatory Modules in Protein-Protein Interaction Network” The 10th Symposium on Bioinformatics and Systems Biology in Taiwan (BIT2012), Taipei, Taiwan, Oct. 19-21, 2012. (Poster Award)
  167. Lin, L.-L., Chen, C.-N., Huang, H.-C.*, Juan, H.-F.* (2012) “Annexin A4, a gastric cancer marker, triggers a signaling cascade for cell proliferation” (Abstract#IS1-2) 71th Annual Meeting of the Japanese Cancer Association, Sapporo, Japan, September 19-21, 2012. (Travel Grant Award, Selected Oral Presentation)
  168. Juan, H.-F.*, Chang, H.-Y., Huang, T.-C., Yang, P.-C., Wang, Y.-C., Huang, H.-C. (2012) “Blocking ectopic ATP synthase suppresses lung adenocarcinoma cell growth by activating unfolded protein response” (Abstract#280) The 13th International Conference on Systems Biology, Toronto, Canada, Aug. 19-23.
  169. Hu, C.-W., Cheng, C.-C., Chiu, W.-C., Ishihama, Y., Huang, H.-C., Juan, H.-F.* (2012) “Quantitative phospho-proteomics to investigate the signaling pathways by targeting membrane protein ATP synthase” (Abstract#35) 2012Taiwan Proteomics Society Annual Conference:Disease Proteomics and Metabolomics, Kaohsiung Medical University, Kaohsiung, Taiwan, May 31-June 1.
  170. Ko, S.-Y., Hu, C.-W., Huang, H.-C., Juan, H.-F.* (2012) “Brassinosteroid-regulated phosphoproteome in Arabidopsis thaliana” (Abstract#32) 2012 Taiwan Proteomics Society Annual Conference:Disease Proteomics and Metabolomics, Kaohsiung Medical University, Kaohsiung, Taiwan, May 31-June 1.
  171. Hu, C.-W., Cheng, C.-C., Chiu, W.-C., Ishihama, Y., Huang, H.-C., Juan, H.-F.* (2012) “Quantitative phospho-proteomics to investigate the signaling pathways by targeting membrane protein ATP synthase” (Abstract# P6-017) The 17th Biophysics Conference, Taipei, Taiwan, May 23-25.
  172. Tsai, H.-T., Chang, H.-Y., Chen, C.-S., Hsu, C.-H., Huang, H.-C., Juan, H.-F.* (2012) “Revealing Novel Interacting Proteins of ATP Synthase by Human Proteome Microarray” (Abstract#P750) The 27th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  173. Ko, S.-Y., Hu, C.-W., Huang, H.-C., Juan, H.-F.* (2012) “Brassinosteroid-Regulated Phosphoproteome in Arabidopsis thaliana” (Abstract#P919) The 27th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  174. Tseng, C.-W., Chien, C.-W., Lin, C.-C., Chen, Y.-J., Lee, S.-J., Huang, H.-C., Juan, H.-F.* (2012) “Revealing New Function of miR-148a Using Quantitative Proteomics Technique” (Abstract#P920) The 27th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  175. Chang, H.-Y., Huang, H.-C., Juan, H.-F.* (2011) “Targeting ecto-ATP synthase Induces Unfolded Protein Response, Cell Cycle Arrest and Growth Inhibition in Lung Cancer” (Abstract#P-1124) 70th Annual Meeting of the Japanese Cancer Association, Nagoya, October 3-5, 2011. (Travel Grant Award)
  176. Huang, T.-C., Chang, H.-Y., Chen, C.-Y., Wu, P.-Y., Lee, H., Liao, Y.-F., Hsu, W.-M.*, Huang, H.-C.*, Juan, H.-F.* (2011) “Silencing of miR-124 induces neuroblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR” (Abstract#P-1159) 70th Annual Meeting of the Japanese Cancer Association, Nagoya, Octoctber 3-5, 2011.
  177. Kuo, T.-C., Lin, C.-C., Juan, H.-F., Huang, H.-C.* “Finding Metastasis-related Functional Modules in Protein Interaction Network of Breast Cancer” The 9th Symposium on Bioinformatics and Systems Biology in Taiwan (BIT2011), Taipei, Taiwan, Sep. 28-30, 2011. (The 1st prize)
  178. Lin, C.-C., Juan, H.-F., Oyang, Y.-J., Fuh, C.-S., Huang, H.-C.* (2011) “Link clustering reveals biological contexts and functional modules in genetic interaction network of Saccharomyces cerevisiae” The 9th Symposium on Bioinformatics and Systems Biology in Taiwan (BIT2011) Taipei, Taiwan, Sep. 28-30, 2011. (Poster Award)
  179. Liao, H.-H., Lin, C.-C., Juan, H.-F., Huang, H.-C.* (2011) “Integrative network analysis for defective microRNA-regulated functions in hepatocellular carcinoma” The 9th Symposium on Bioinformatics and Systems Biology in Taiwan (BIT2011) Taipei, Taiwan, Sep. 28-30, 2011. (Poster Award)
  180. Wang, H.-K., Takeuchi, R., Nakayashiki, T., Mori, H., Huang, H.-C., Juan, H.-F.* (2011) “Genome-wide analysis of exogenous 1-butanol stress in Escherichia coli” (Abstract#P3-014) The 16th Biophysics Conference, Hualien, Taiwan, May 18-21. (The 3rd prize)
  181. Wu, Y.-H., Hu, C.-W., Chang, H.-Y., Huang, H.-C., Juan, H.-F.* (2011) The Mechanisms Underlying Anti-Cancer Effects of ATP Synthase Inhibitor in Lung Tumor Xenograft Model. 2011 Translational Medicine Conference and Taiwan Proteomics Society Annual Symposium, Taipei, Taiwan, April 27-28. (Poster Award)
  182. Tseng, C.-W., Lin, C.-C., Chuang, K.-N., Chen, C.-N., Huang, H.-C., Juan, H.-F.* (2011). MicroRNA-148a Suppresses Cell Metastasis through Targeting 14-3-3β in Gastric Cancer. 2011 Translational Medicine Conference and Taiwan Proteomics Society Annual Symposium, Taipei, Taiwan, April 27-28. (Poster Award)
  183. Chuang, K.-N., Tseng, C.-W., Lin, C.-C., Chen, C.-N., Huang, H.-C., Juan, H.-F.* (2011) “Elucidating the Role of 14-3-3Β in Gastric Cancer Cells Using Proteomics and Network Analysis” (Abstract#P205) 26th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 19-20. (Poster Award)
  184. Chen, N.-N., Chang, H.-Y., Chen, Y.-J., Huang, H.-C., Juan, H.-F.* (2011) “Elucidating the Molecular Mechanism of ATP Synthase Inhibitor Citreoviridin on Anti-Proliferative Activity of Breast Cancer Cells” (Abstract#P206) 26th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 19-20.
  185. Wang, H.-K., Takeuchi, R., Nakayashiki, T., Mori, H., Huang, H.-C., Juan, H.-F.* (2011) “Study of Exogenous 1-Butanol Stress on Escherichia Coli Using Genome-Wide Approach” (Abstract#P207) 26th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 19-20.
  186. Wu, C.-C., Chen, H.-J., Hsieh, H.-L., Huang, H.-C., Juan, H.-F.* (2011) “The Role of Brassinosteroid-Regulated miR395a in Arabidopsis thaliana” (Abstract#P208) 26th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 19-20.
  187. Yeh, T.-W., Chen, C.-Y., Juan, H.-F., Huang, H.-C.* (2011) “Characteristics of MicroRNA Regulation in Transcription Network Hierarchy” (Abstract#P174) 26th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 19-20.
  188. Kuo, T.-C., Lin, C.-C., Juan, H.-F., Huang, H.-C.* (2011) “Finding Metastasis-related Functional Modules in Protein Interaction Network of Breast Cancer” (Abstract#P199) 26th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 19-20.
  189. Tseng, C.-W., Lin, C.-C., Huang, H.-C., Chen, C.-N., Juan, H.-F.* (2010) “Integrative network analysis reveals active microRNA and their functions in gastric cancer” (Abstract#O3, Oral Presentation) The Taiwan Society for Biochemistry and Molecular Biology: Beigang Autumn Camp, Nantou, Taiwan, November 11-13.
  190. Lin, L.-L., Huang, H.-C., S., Ogihara, Wang, J.-T., Chen, C.-N., Juan, H.-F.* (2010) “Membrane repair against H. pylori promotes cancer cell proliferation” (Abstract#O17, Oral Presentation) The Taiwan Society for Biochemistry and Molecular Biology: Beigang Autumn Camp, Nantou, Taiwan, November 11-13.
  191. Wu, W.-L., Chang, J.-Y., Huang, H.-C., Juan, H.-F., Wu, S.-H.* (2010) “Genome sequencing and feather-degrading ability of Meiothermus Taiwanensis” (Abstract#O17, Oral Presentation) The Taiwan Society for Biochemistry and Molecular Biology: Beigang Autumn Camp, Nantou, Taiwan, November 11-13.
  192. Chang, H.-Y., Huang, T.-C., Huang, H.-C., Wang, Y.-C., Juan, H.-F.* (2010) “Ecto-ATP synthase, an efficient therapeutic biomarker in non-small cell lung cancer (NSCLC)” (Abstract#P9) The Taiwan Society for Biochemistry and Molecular Biology: Beigang Autumn Camp, Nantou, Taiwan, November 11-13. (Poster Award)
  193. Huang, T.-C., Chen, C.-Y., Hsu, W.-M., Huang, H.-C., Juan, H.-F.* (2010) “The impact of miR-124 on neuroblastoma cell differentiation” (Abstract#P53) The Taiwan Society for Biochemistry and Molecular Biology: Beigang Autumn Camp, Nantou, Taiwan, November 11-13.
  194. Lin, M.-H., Yi, T.-H., Huang, H.-C., Wu, S.-H., Juan, H.-F.* (2010) “Phosphoproteome of rhodopseudomonas palustris indicates threonine phosphorylation of pyruvate phosphate dikinase affecting the biofeul production and carbon fixation” (Abstract#P8) The Taiwan Society for Biochemistry and Molecular Biology: Beigang Autumn Camp, Nantou, Taiwan, November 11-13.
  195. Hu, C.-W., Chang, Y.-L., Huang, H.-C., Chen, H.-C., K.-Huang, L-L, J. C. Liao, Juan, H.-F.* (2010) “A proteomic study of growth enhancement by Calvin-Benson-Bassham cycle proteins and chaperonin GroEL gene over-expression in Rhodopseudomonas palustris” (Abstract#P7) The Taiwan Society for Biochemistry and Molecular Biology: Beigang Autumn Camp, Nantou, Taiwan, November 11-13. (Poster presentation)
  196. Tseng, C.-W., Lin, C.-C. , Huang, H.-C., Chen, C.-N. , Juan, H.-F. (2010) “Integrative Network Analysis Reveals Key MicroRNAs and Their Functions in Gastric Cancer” (Abstract#P02.114) The 11th International Conference on Systems Biology, Edinburgh, Scotland, UK, October 10-15.
  197. Hsu, W.-M., Shih, Y.-Y., Lee, H.-Y., Juan, H.-F., Tsay, Y.-G., Liao, Y.-F. (2010) “The interaction between GRP75 and retenoic acid receptor-α/retenoid X receptor-α is essential for retenoic acid-induced neuronal differentiation of neuroblastoma cells” (Poster Competition Award). Advances in Neuroblastoma Research, Stockholm, Sweden, June 21-24.
  198. Chang, H.-H., Hsu, W.-M., Juan, H.-F., Liao, Y.-F., Huang, M.-C., Lee, H.-Y., Hsieh, F.-J. Lin, K.-H. (2010) “Microarray-based pathway analysis leads to the identification of potential molecularmechanisms underlying gamma-secretase inhibitor-induced differentiation” Advances in Neuroblastoma Research, Stockholm, Sweden, June 21-24.
  199. Wen-Ming Hsu, Pei-Yi Wu, Juan, H.-F., Lee, H.Y. (2010) “Aromatic hydrocarbon receptor down-regulates MYCN expression and promotes neuronal differentiation of neuroblastoma” Advances in Neuroblastoma Research, Stockholm, Sweden, June 21-24.
  200. Chou, Y.-T., Lin, L.-L., Lin C.-C., Huang, H.-C., Juan, H.-F.* (2010) “The role of annexin A4 in gastric cancer cell proliferation” (Abstract#P6-005) The 15th Joint Biophysics Conference, Taipei, Taiwan, May 19-21.
  201. Liang, S.-P., Lin, C.-C., Wang, H.-W, Juan, H.-F.*, Huang, H.-C. (2010) “Dynamic features of functional network modules during tumor progression” (Abstract#P6-012) The 15th Joint Biophysics Conference, Taipei, Taiwan, May 19-21.
  202. Chen, C.-Y, Hsu, W.-M., Huang, H.-C., Juan, H.-F.* (2010) “The impact of miR-124 on neuroblastoma cell differentiation” (Abstract#P6-020, Poster Competition Award) The 15th Joint Biophysics Conference, Taipei, Taiwan, May 19-21.
  203. Hsu, C.-C., Chou, Y.-T., Huang, H.-C., Shih, A. C.-C., Li, W.-H. *, Juan, H.-F.* (2010) “Gene expression networks of microRNA p-27-5p-treated human breast cancer cells” (Abstract#P691, Poster Award) 25th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 27-28.
  204. Yi, T.-H., Lin, M.-H., Wu, S.-H., Huang, H.-C., Juan, H.-F.* (2010) “Phosphoproteome of Rhodopseudomonas palustris” (Abstract#P690) 25th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 27-28.
  205. Pai, C.-C., Chen, C.-Y., Chen, S.-T., Juan, H.-F.*, Huang, H.-C.* (2010) “Co-regulation of microRNA and transcription factor in Drosophila melanogaster transcriptional and protein-protein interaction networks” (Abstract#P698) 25th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 27-28.
  206. Wu, H.-C., Juan, H.-F., Hsiang, J.-T., Wu, K.-P.*, Huang, H.-C.* (2010) “Effects of microRNA regulation on noise in gene expression” (Abstract#P699) 25th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 27-28.
  207. Wu, Y.-S., Lin, C.-C., Oyang, Y.-J., Juan, H.-F.*, Huang, H.-C.* (2010) “Integrative Network Analysis Reveals Dynamic Functional Modules in Drosophila melanogaster Embryonic Development” (Abstract#P891) 25th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 27-28.
  208. Lin, L.-L., Chou, Y.-T., Huang, H.-C., Chen, C.-N., Juan, H.-F.* (2009) “Gene network of Helicobacter pylori-infected host cell: annexin A4-involved signaling and regulation in gastric cancer” (Abstract#2.014) The 10th International Conference on Systems Biology, Stanford, California, USA, August 30-Sepetmber 4.
  209. Hu, C.-W., Huang, H.-C., Liao, J. C., Juan, H.-F.* (2009) “Elucidating regulation of carbon dioxide assimilation in R. palustris using synthetic biology and proteomics approach” (Abstract#T02) 2009 TPS International Proteomics Conference and 5th AOHUPO MPI Workshop, Taipei, Taiwan, June 19-20.
  210. Chang, H.-Y., Huang, T.-C., Wei, Y.-C., Huang, H.-C., Wang, Y.-C., Juan, H.-F.* “ATP synthase, a new target for non-small cell lung cancer (NSCLC) therapy” (Abstract#C07, Selected Oral Presentation) 2009 TPS International Proteomics Conference and 5th AOHUPO MPI Workshop, Taipei, Taiwan, June 19-20.
  211. Lin, L.-L., Chou, Y.-T., Huang, H.-C., Chen, C.-N., Juan, H.-F.* “Gene network of Helicobacter pylori-infected host cell: annexin A4-involved signaling and regulation in gastric cancer” (Abstract#C06, Poster Award) 2009 TPS International Proteomics Conference and 5th AOHUPO MPI Workshop, Taipei, Taiwan, June 19-20.
  212. Tseng, C.-W., Chen, C.-N.*, Huang, H.-C., Juan, H.-F.* (2009) “14-3-3β, a Novel Biomarker for Early Detection and Prognosis in Gastric Cancer” (Abstract#C04) 2009 TPS International Proteomics Conference and 5th AOHUPO MPI Workshop, Taipei, Taiwan, June 19-20.
  213. Hu, P.-Y., Huang, H.-C., Chen, C.-N., Juan, H.-F.* (2009)“Elucidating Regulatory Mechanism of Estrogen Receptors in Helicobacter pylori-infected Gastric Cancer” (Abstract#B02) 2009 TPS International Proteomics Conference and 5th AOHUPO MPI Workshop, Taipei, Taiwan, June 19-20.
  214. Tseng, C.-W., Chen, C.-N.*, Juan, H.-F.* (2009) “14-3-3β, a Novel Biomarker for Early Detection and Prognosis in Gastric Cancer” (Abstract#O5, Oral Presentation) 24th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22.
  215. Hu, C.-W., Huang, H.-C., Liao, J. C., Juan, H.-F.* (2009) “Regulation of Carbon Dioxide Assimilation in R. palustris Through CBB Genes and GroEL Overexpression” (Abstract#O6, Oral Presentation) 24th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22.
  216. Hu, P.-Y., Huang, H.-C., Juan, H.-F.* (2009) “Elucidating Regulatory Pathway of Estrogen Receptors in Helicobacter pylori-infected Gastric Cancer” (Abstract#O29, Oral Presentation) 24th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22.
  217. Chen, C.-Y., Juan, H.-F.*, Huang, H.-C.* (2009) “Co-regulation of microRNAs in Transcriptional Regulatory Network” (Abstract#O31, Oral Presentation) 24th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22.
  218. Chang, Y.-Y., Lee, T.-Y., Huang, H.-C., Shih, A. C.-C., Li, W.-H., Juan, H.-F.* (2009) “Overexpression of Novel MicroRNA P-27-5p Enhances G0/G1 Arrest in Breast Cancer Cells” (Abstract#O44, Oral Presentation) 24th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22.
  219. Chang, Y.-L., Huang, H.-C., Liao, J. C., Juan, H.-F.* (2009) “Effects of Overexpressed Transketolase on Carbon Flow to ATP Generation in Rhodopseudomonas palustris” (Abstract#P44) 24th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 21-22.
  220. Chang, H.-Y., Huang, H.-C., Huang, T.-C., H. Mori, Juan, H.-F.* (2008) “Application for biofuel production: development of 1-Butanol tolerant Escherichia coli” (Poster7 & Short Talk4) 4th International Symposium of the Kanagawa University-National Taiwan University Exchange Program 2008, Taipei, Taiwan, Dec. 27, 2008.
  221. Huang, T.-C., Chang, H.-Y., Hsu, C.-H., Kuo, W.-H., Chang, K.-J., Juan, H.-F.* (2008) “Targeting Therapy on Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B” (Poster8) 4th International Symposium of the Kanagawa University-National Taiwan University Exchange Program 2008, Taipei, Taiwan, Dec. 27, 2008.
  222. Tseng, C.-W., Chen, C.-N., Juan, H.-F.* (2008) “14-3-3 is a novel biomarker for early detection and prognosis in gastric cancer” (Abstract#P-44, 1st Prize) 2008 Taiwan – Japan Proteomics Symposium, Taipei, Taiwan, Dec. 03 - 05, 2008.
  223. Hu, C.-W., Huang, H.-C., Juan, H.-F.* (2008) “Regulation of carbon dioxide assimilation in R. palustris through CBB gene and GroEL overexpression” (Abstract#P-58, 3rd Prize) 2008 Taiwan – Japan Proteomics Symposium, Taipei, Taiwan, Dec. 03 - 05, 2008.
  224. Lin, C.-C., Juan, H.-F., Huang, H.-C. (2008) “Comparative Analysis of Co-expressed Protein Interaction Networks Reveals Heart Failure Related Modules” (Travel Award, Oral presentation) The 2nd Taiwan-Japan Young Researchers Conference on Computational and Systems Biology, Tokyo, Japan, Nov. 4-6.
  225. Tseng, C.-W., Chen, C.-N., Huang, H.-C., C.-C., Chang, Chang, K.-J., Lee, P.-H., Kuo, M.-L., Jeng, Y.-M., Juan, H.-F.* (2008) “Clinical significance of connective tissue growth factor, its mediated microRNAs and target genes in gastric cancer” (Abstract#B-03) 20th Federation of Asian and Oceanian Biochemists and Molecular Biologists (FAOBMB) symposium, Taipei, Taiwan, Oct. 23~25.
  226. Chang, H.-Y., Huang, H.-C., Huang, T.-C., H. Mori, Juan, H.-F.* (2008) “Development of 1-Butanol Tolerant Microorganism for Biofuel Production” (Travel Award, Oral presentation) The Fourth International Meeting on Synthetic Biology (SB4.0), Hong Kong, China, October 10-12.
  227. Hsu, J.-W., Huang, H.-C, Juan, H.-F.* (2008) “Systems Analysis Reveals the Differentiation Mechanism of Leukemia Cells to Macrophages Induced by Ganoderma lucidum Polysaccharides” (Abstract#DS1-3-18) The 9th International Conference on Systems Biology, Göteborg, Sweden, August 22-28.
  228. Chang, H.-Y., Huang, T.-C., , Hsu, C.-H., Kuo, W.-H., Chang, K.-J., Juan, H.-F.* (2008) “Targeting Therapy on Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B” Future Knowledge of Biomedical Science 2008 Conference and the seventh meeting of the Straits of Biomedical Strait (2008前瞻生物醫學科學新知研討會暨第七屆海峽兩岸生物醫學會議), Jun. 27-28 (Academic Foundation Professor Lin Rongyao Education Foundation Poster Award財團法人林榮耀教授學術教育基金會壁報展示獎)
  229. Cheng, K.-L., Huang, H.-C., Hsu, C.-W., Hsu*, W.-M., Juan, H.-F.* (2008) “Protein-protein Interaction Network of AHR and MYCN Involved in Neuroblastoma” (Abstract#B73) Advances in Neuroblastoma Research (ANR2008), Chiba, Japan, May 21-24.
  230. Liao, Y.-F., Hsu, W.-M., Lee, H.-Y., Juan, H.-F., Tsay Y.-G., Shih, Y.-Y., Wang, B.-J., Chang, H.-H., Hsieh, F.-J. (2008) “GRP75 Promotes the Neuronal Differentiation of Neuroblastoma Cells” (Abstract#B124) Advances in Neuroblastoma Research (ANR2008), Chiba, Japan, May 21-24.
  231. Hsu, W.-M., Liao Y.-F., Lee, H.-Y., Tsay Y.-G., Juan, H.-F., Hsieh, F.-J., Jeng,Y.-M., Chang, H.-H., Lin, K.-H.(2008) “Identification of GRP75 as an Independent Favorable Prognostic Marker of Neuroblastoma by a Proteomics Analysis” (Abstract#TR45) Advances in Neuroblastoma Research (ANR2008), Chiba, Japan, May 21-24.
  232. Chang, H.-H., Hsu, W.-M., Lee, H.-Y., Juan, H.-F., Lai, H.-S., Chen, W.-J., Lee, Y.-L., Liao, Y.-F., Hsieh, F.-J., Lin, K.-H.(2008) “Notch Signaling Pathway and Calreticulin in Neuroblastoma: Interactions and Prognostic Significance” (Abstract#TR115) Advances in Neuroblastoma Research (ANR2008), Chiba, Japan, May 21-24.
  233. Juan, H.-F.*, Huang, H.-C., Chen, T.-Y., Chang, Y.-L., Hu, C.-W., Yi, T.-H., Bernstein, J. R., Liao, J. C. (2008) “Overexpression of Calvin Cycle Genes in Rhodopseudomonas palustris Improves the Efficiency of Carbon Dioxide Fixation” (Abstract#23) An International Symposium: Biotechnology for Better Crops, Energy and Health: ABRC 10thAnniversary, Taipei, Taiwan, April 29-May 1.
  234. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Mori, H., Juan, H.-F.* (2008) “Application for Biofuel Production: Development of 1-Butanol Tolerant Escherichia coli” (Abstract#24) An International Symposium: Biotechnology for Better Crops, Energy and Health: ABRC 10thAnniversary, Taipei, Taiwan, April 29-May 1.
  235. Lee, T.-A., Juan, H.-F.* (2008) “Identification of human novel miRNAs and their targets” (Abstract#O115, Oral Presentation) 23th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 29-30.
  236. Hsu, J.-W., Huang, H.-C, Cheng, K.-C., Chen, S.-T., Wong, C.-H., Juan, H.-F.* (2008) “Ganoderma lucidum polysaccharides induce apoptosis and differentiation in human monocytic leukemia cell line THP-1” (Abstract#O107, Oral Presentation) 23th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 29-30.
  237. Huang, T.-C., Chang, H.-Y., Wang, Y.-C., Juan, H.-F.* (2008) “The effect of ATP synthase inhibitor Aurovertin B in non-small cell lung cancer” (Abstract#O79, Oral Presentation) 23th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 29-30.
  238. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Mori, H., Juan, H.-F.* (2008) “Proteomics analysis of 1-butanol tolerant Escherichia coli for bioenergy application” (Abstract#O53, Oral Presentation) 23th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 29-30.
  239. Chen, T.-Y., Huang, H.-C., Juan, H.-F.* (2008) “Profiling transcriptome and proteome of Rhodopseudomonas palustris in different metabolic states for bioenergy application” (Abstract#P275) 23th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 29-30.
  240. Wu, C.-Y., Chen, H.-W., Huang, H.-C., Juan, H.-F.* (2008) “Identifying the regulatory relationships between miR-218 and NPY1R in MCF-7 and MDA-MB-231 breast cancer cell lines” (Abstract#P66) 23th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 29-30.
  241. Lin, L.-L., C.-N. Chen*, Lin, W.-C., Lee, P.-H., Chang, K.-J., Lai, Y.-P., Wang, J.-T. and Juan, H.-F.* (2007) “Annexin A4: A novel molecular marker for gastric cancer with Helicobacter pylori infection using proteomics approach” (Abstract#P069) Taiwan Proteomics Society International Conference 2007 (TPSIC2007), NCKU, Tainan, Taiwan, December, 4-5.
  242. Chang, H.-Y., Huang, H.-C., Mori, H., Juan, H.-F.* (2007) “Screening and proteomics study of butanol-tolerant E. coli” (Abstract#P80) The Taiwan Society Biochemistry and Molecular Biology Fall Camp, Hsinchu, Taiwan, October 19-20. (Poster Award)
  243. Hsu, J.-W., Huang, H.-C., Cheng, K.-C., Chen, S.-T., Wong, C.-H., Juan, H.-F.* (2007) “Ganoderma lucidum polysaccharides induce apoptosis in uman monocytic leukemia cell line” (Abstract#P99) The Taiwan Society Biochemistry and Molecular Biology Fall Camp, Hsinchu, Taiwan, October 19-20. (Poster Award)
  244. Huang, T.-C., Chang, H.-Y., Juan, H.-F.* (2007) “Targeting therapy on breast carcinoma by ATP synthase inhibitor Aurovertin B” (Abstract#P19) The Taiwan Society Biochemistry and Molecular Biology Fall Camp, Hsinchu, Taiwan, October 19-20.
  245. Chang, C.-C., Leu, J.-H., , Wu, J.-L., Hsu, C.-W., Hirono, I., Aoki, T., Juan, H.-F., Lo, C.-F., Kou, G.-H.*, Huang H.-C.* (2007) “Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon” (Abstract#P92) The Taiwan Society Biochemistry and Molecular Biology Fall Camp, Hsinchu, Taiwan, October 19-20. (Poster Award)
  246. Chen, C.-P., Huang, H.-C., Juan, H.-F.* (2007) “MicroRNAs-involved regulatory network of ATRA- and Am80-induced human leukemia cell line HL-60 differentiation” (Abstract#I10) The 8th International Conference on Systems Biology, Long Beach, USA, October 1-6.
  247. Chiu, Y.-W., Juan, H.-F., Huang, H.-C. (2007) “Prediction of Functional Associated Proteins Using Topological Similarity in Protein-Protein Interaction Network” (Abstract#H14) The 8th International Conference on Systems Biology, Long Beach, USA, October 1-6. (Travel Award)
  248. Lin, C.-C., Juan, H.-F., Hsiang, J.-T., Mori, H., Huang, H.-C. (2007) “An Essential Core of Protein-Protein Interaction Network in Escherichia coli” (Abstract#H15) The 8th International Conference on Systems Biology, Long Beach, USA, October 1-6.
  249. Hsu, C.-W., Juan, H.-F., Huang, H.-C. (2007) “Characterization of microRNA-Regulated Protein-Protein Interaction Network” (Abstract#H16) The 8th International Conference on Systems Biology, Long Beach, USA, October 1-6.
  250. Hwang, Y.-C, Juan, H.-F., Huang, H.-C.* (2007) “Predicting Essential Genes Based on Network and Sequence Analysis” (Abstract#P22) 2007 Symposium of Bioinformatics and Systems Biology in Taiwan, Chiayi, Taiwan, September 4-5.
  251. Chen, H.-W., Ni, K.-C., Huang, H.-C., Juan, H.-F.* (2007) “MiLink – a Web Tool to Analyze the Association between Gene Expression Profiles with microRNAs” (Abstract#P23) 2007 Symposium of Bioinformatics and Systems Biology in Taiwan, Chiayi, Taiwan, September 4-5.
  252. Lin, C.-C., Juan, H.-F., Hsiang, J.-T., Mori, H., Huang, H.-C.* (2007) “An Essential Core of Protein Interaction Network in Escherichia coli” (Abstract#P25) 2007 Symposium of Bioinformatics and Systems Biology in Taiwan, Chiayi, Taiwan, September 4-5.
  253. Chang, Y.-W., Chang, S.-C., Juan, H.-F.* (2007) “Localizomics study in TPA-induced HL-60 cells differentiation into macrophages” (Abstract#SB2) The 12th Symposium on Recent Advances in Biophysics, Miaoli, Taiwan, May 23-25.
  254. Ni, K.-C. , Huang, H.-C., Chen, H.-W., Yi, T.-H., Chen, S.-T. Juan, H.-F.* (2007) “Regulatory mechanism of TPA-induced HL-60 cell differentiation” (Abstract#O031, Oral Presentation) 22th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  255. Shih, C.-Y., Huang, T.-C., Juan, H.-F.* (2007) “Effect of cyclic RGD on phosphoprotein signaling in human breast cancer cell MCF-7” (Abstract#O081, Oral Presentation) 22th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  256. Chen, C.-P., Huang, H.-C., Chen, H.-W., Juan, H.-F.* (2007) “Identification of differenciation related gene networks and micrornas in ATRA- and AM80-treated human HL-60 leukemia cells” (Abstract#P591, Poster Award) 22th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  257. Lin, L.-L., Chen, C.-Y., Juan, H.-F.* (2007) “A potential new therapeutic target of gastric cancer: annexin A4” (Abstract#P592) 22th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  258. Leu, J.-H., Chang, C.-C., Wu, J.-L., Hirono, I., Aoki, T., Juan, H.-F., Lo, C.-F., Huang, H.-C., and Kou, G.H. (2007) “Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected penaeus monodon” (Abstract#P587) 22th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 17-18.
  259. Chen, H.-W. , Huang, H.-C., Lin, Y.-S., Chang, K.-J., Kuo, W.-H., Hwa, H.-L., Hsieh, F.-J., Juan, H.-F.* (2006) “Gene expression profiles reveals association of single nucleotide polymorphisms with estrogen receptor status in breast cancer populations” (Oral Presentation) 2006 International Symposium on Biomedical Engineering, Taipei, Taiwan, December 14-16.
  260. Juan, H.-F.*, Cheng, K.-C., Huang, H.-C., Ou, C.-H., Chen, J.-H., Yang, W.-B., Chen, S.-T., Wong, C.-H. (2006) (Abstract#23)“Elucidating the molecular regulation of Ganoderma lucidum polysaccharides in human monocytic cells: from gene expression to network construction” The 7th International Conference on Systems Biology, Yokohama, Japan, October 9-11.
  261. Ou, C.-H., Chang, C.-C., Hsia, H.-C., Wang, F.-S., Juan, H.-F.*, Huang, H.-C.* (2006) “BSIP – a web server for systems-biology structure identification program development” (p83-85, Oral presentation) The sixth annual Emerging Information Technology Conference (EITC-06), Dallas, USA, Aug 10-12.
  262. Lin, C.-C., Hwang, Y.-C., Juan, H.-F., Mori, H., and Huang, H.-C. (2006) “Topological Characteristics of Essential Genes in the Protein Interaction Network of Escherichia coli” Bioinformatics in Taiwan (Abstract#P15), Taichung, Taiwan, Sep 12-15.
  263. Y.-C. Fang, H.-C. Huang and Juan, H.-F.* (2006) “Text Extraction and Mining of DNA Methylation Information” (p78-80, Oral presentation) The sixth annual Emerging Information Technology Conference (EITC-06), Dallas, USA, Aug 10-12.
  264. Tseng, C.-W., Juan, H.-F.* (2006) “To investigate the effect of anti- cancer drug 5-FU on the molecular mechanism of gastric cancer cell line SCM1” 20th Symposium of the Protein Society & 20th Anniversary Celebration, San Diego, California, USA, Aug 5-9.
  265. Huang, T.-C. , Chang, C.-C., Huang, H.-C., Juan, H.-F.* (2006) “Induction of caspase-dependent cell death pathway by cyclic RGD in human breast carcinoma cell line MCF-7” 20th Annual symposium of the Protein Society & 20th Anniversary Celebration, San Diego, California, USA, Aug 5-9.
  266. Juan, H.-F.*, Cheng, K.-C., Huang, H.-C., Ou., C.-H., Chen, J.-H., Yang, W.-B., Chen, S.-T., Wong, C.-H. (2006) “Elucidating the molecular regulation of Ganoderma lucidum polysaccharides in human monocytic cells: from gene expression to network construction” The 11th Symposium on Recent Advances in Biophysics, Taipei, Taiwan, May 24-26, 2006.
  267. Ou, C.-H., Chang, C.-C., Hsia, H.-C., Wang, F.-S., Juan, H.-F. *, Huang, H.-C.* (2006) “BSIP – a web server for systems-biology structure identification program development” 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan, Feb 13-16. (Abstract#P028, 2nd Poster Award)
  268. Bow, Y.-Y., Chang, J.-Y., Juan, H.-F., Mori, H., Huang, H.-C. (2006) “Elucidating the essentiality of essential genes in E. coli K-12” 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan, Feb 13-16. (Abstract#P027, 1st Poster Award)
  269. Hwang, Y.-C., Lin, C.-C., Juan, H.-F., Mori, H., Huang, H.-C. (2006) “Topologial characteristics of protein interaction network and roles of essential genes in E. COLI K-12” 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan, Feb 13-16. (Abstract#P026)
  270. Li, J.-J., Juan, H.-F.*, Chung, I-F., Huang, H.-C.* (2006) “Identification of RNA-binding protein residues using machine learning approaches” 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan, Feb 13-16. (Abstract#P025)
  271. Lin, N., Chiou, S.-H., Juan, H.-F.*, Huang, H.-C.* (2006) “Bioinformatics approach to the study of the correlation between gene expression profiles and protein-protein interactions using matrices” 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan, Feb 13-16. (Abstract#P029)
  272. Huang, T.-C. Chang, C.-C., Huang, H.-C., Juan, H.-F.* (2005) “Cyclic RGD-induced cell death in human breast carcinoma cell line MCF-7: the influence of caspase pathway” The 6th International Conference on Systems Biology, Boston, MA, U. S. A., October 19-24, 2005.
  273. Bow, Y.-Y., Chang, J.-Y., Juan, H. F., Mori, H., Huang, H.-C. (2005) “Elucidating the essentiality of essential genes in E. coli K-12” The 6th International Conference on Systems Biology, Boston, MA, U. S. A., October 19-24.
  274. Tseng, H.-W., Chen, S.-T., Juan, H.-F., Huang, H.-C., Chen, C.-F., and Wang, G.-J. (2005) “High-throughput Proteomic Analysis of the Anti-inflammatory Effect of Berberine in Rat Cultured Vascular Endothelial Cells” (Abstract#O100, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27.
  275. Chang, S.-C., Huang, H.-C., Chen, S.-T., and Juan, H.-F.* (2005) “A Subcellular Proteomics Analysis of Human Myeloid Leukemia Cells Differentiation to Macrophages Using Microwave Technology Combined with Mass Spectrometry” (Abstract#O87, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27.
  276. Huang, T.-C., Huang, H.-C. Chen, S.-T., and Juan, H.-F.* (2005) “Cyclic RDG-induced Cell Death in Human Breast Carcinoma (MCF-7) Cells: the Influence of Caspase Pathway” (Abstract#O80, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27.
  277. Li, J.-J. Juan, H.-F., Ko, R.-S., Chung, I-F., Huang, H.-C. (2005) “Identification of RNA-binding Protein Residues Using Machine Learning Approaches” (Abstract#O39, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27.
  278. Chang, H.-Y., Chien, K.-C., Wang, Y.-C., and Juan, H.-F.* (2005) “Discovery of Biomarkers in Human Lung Cancer by Proteomics Approach” (Abstract#P567, Best Poster Paper) 20th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, March 26-27.
  279. Li, J.-J., Huang, H.-C., Ko, R.-S., Chen, S.-T., Juan, H.-F.* (2004) “BGSSJ: an Interactive Tool for Biological Interpretation of Gene Expression and Proteomics Data ” (Abstract#258, 2nd Prize) Bioinformatics in Taiwan, Taipei, Taiwan, September 9-11.
  280. Peng, C.-L., Lin, Y.-C., Huang, H.-C., ao, C. -Y., Chen, S.-T., and Juan, H.-F.* (2004) “ProtExt: a Web-based Protein-protein Interaction Extraction System for PubMed Abstract” (Abstract#A-2) 12th International Conference on Intelligent Systems for Molecular Biology (ISMB) and Conference on Computational Biology (ECCB), Glasgow, Scotland, Jul 31-Aug 4.
  281. Juan, H.-F.*, Chang, S.-C., Huang, H.-C., Chen, S.-T. (2004) “A New Application of Microwave Technology to Proteomics” International Symposium on Microwave Science and Its Application to Related Fields 2004, Takamatsu, Japan, July 26-30. (Financial Support)
  282. Chang, D. T.-H, Chen, C.-Y., Chung, W.-C., Oyang, Y.-J., Juan, H.-F., Huang, H.-C. (2004) “An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures” IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE2004), Taichung, Taiwan, ROC, May 19-21.
  283. Wang, I-H., Huang, H.-C., Chen, S.-T., Juan, H.-F.* (2004) “Proteomic Analysis of a Novel Compound – Cyclic RGD in Breast Carcinoma Cell Line MCF-7 Using Biomic Approach” (Abstract#PB18) 3rd International Proteomics Conference 2004 (IPC’03), Taipei, Taiwan, May 15-17.
  284. Tseng, H. W., Wang, G. J., Juan, H.-F. , Chen, C. F., Huang, H. C., and Chen, S. T. (2004) “Systems Biology Study of LPS-induced Inflammatory Responses Endothelial Cells” (Abstract#PB14) 3rd International Proteomics Conference 2004 (IPC’03), Taipei, Taiwan, May 15-17.
  285. Chang, S.-C., Topanurak, S., Chen, S.-T., Juan, H.-F.* (2004) “A New Application of Microwave Technology to Proteomics” (Abstract#PA24) 3rd International Proteomics Conference 2004 (IPC’03), Taipei, Taiwan, May 15-17.
  286. Li, J.-J., Huang, H.-C., Ko, R.-S. Chen, S.-T., Juan, H.-F.* (2004) “BGSSJ: an Interactive Tool for Biological Interpretation of Gene Expression and Proteomics Data” (Abstract#PA12, Top 10 Prize) 3rd International Proteomics Conference 2004 (IPC’03), Taipei, Taiwan, May 15-17.
  287. Peng, C.-L., Lin, Y.-C., Huang, H.-C., ao, C. -Y., Chen, S.-T., and Juan, H.-F.* (2004) “ProtExt: a Web-based Protein-protein Interaction Extraction System for PubMed Abstract” (Abstract#PA05) 3rd International Proteomics Conference 2004 (IPC’03), Taipei, Taiwan, May 15-17.
  288. Chen, C.-Y., Juan H.-F.*, Hsiao P.-J., Chen S.-T., Tseng H.-W., and Oyang Y.-J. (2003) “Design of an Incremental Clustering Package for Protein Function and Family Analysis” The Fifth International Symposium on Multimedia Software Engineering (MSE), Taichung, Taiwan, ROC, December 10-12.
  289. Juan, H.-F.*, Huang, H.-C., and Chen, S.-T. (2003) “The Molecular Effect of cyclic-RGD peptide on MCF-7 Cells”(Poster #149) The 4th International Conference on Systems Biology, Saint Louis, MO, U. S. A., November 5-9.
  290. Yang, R.-T., Juan, H.-F., and Chen, M.-S. (2003) “Using Discretization Techniques to Discover Gene Patterns for Diagnostics” (Abstract#PC12). 4th East Asian Biophysics Symposium (4th EABS), Taipei, Taiwan, November 3-6.
  291. Huang, S.-C., Chen, J.-H., Juan, H.-F., Chen, S.-T., Hsu, W.-T., Chen, Y.-J., Chiang, C.-Y., Chang, Y.-W. (2003) “Identification of Acute Phase Proteins in Sera from Tumor-burden Mice: a Proteomics-based Approach” (Abstract#341).18th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, Mar. 22-23.
  292. Yang, R.-T., Juan, H.-F., and Chen, M.-S. (2003) “Using Discretization Techniques to Discover Trends and Differential Equations to Infer Gene Networks for Diagnostics” Proceedings in 7th Join Conference on Information Sciences, North Carolina, USA, 962-966.
  293. Juan, H.-F., Chen, J. -H., Shyu, W. T., Huang, S.-C., Chiang, C.-Y., Chang, Y.W., Chen, S.-T., Chen, Y.J. (2002) “Tumor Marker Discovery by Proteomic Approach” (Abstract#BC05) 70th Chinese Chemical Society Annual Meeting, Taipei, Taiwan, Oct. 25-27.
  294. Xu, D.-H., Juan, H.-F., Nohda, M., Ban, T. (2001) “QTLS mapping of type I and type II resistance to FHB in wheat.” National Fusarium Head Blight Forum, Erlanger, KY, U. S. A., December 8 -10, Biotechnology 40-42.
  295. Juan, H.-F., Wu, T.-H., Chou, C.-K., Wang, K.-T. (1999) “A potential hypoglycemic component from the green wheat.” (Abstract#309-M) 13th Symposium of the Protein Society, Boston, MA, U. S. A., July 24-28.
  296. Juan, H.-F., Yu, H.-M., Wang, K.-T. (1999) “Characterization of a potential hypoglycemic component from the green wheat.” (Abstract#134) 14th Joint Annual Conference of Biomedical Sciences, Taipei, Taiwan, April 10-11.
  297. Chiou, S.-H., Juan, H.-F. and Huang, H.-C. (1995) “Octopus S-crystallins with endogenous glutathione S-transferase activity: computer graphic modelling and sequence comparison with authentic enzymes.” (Abstract#619-M) 9th Symposium of the Protein Society, Boston, MA, U. S. A., July 8-12.

Books (Chapters) / 專書（章節）

  1. Juan, H.-F. (2019) “Proteomic techniques and their applications” in Biomolecular and Bioanalytical Techniques: Theory, Methodology and Applications, Edited by Vasudevan Ramesh (John Wiley & Sons, Inc., UK), pp.81-99.
  2. Siddiqui, H., Sami, F., Juan, H.-F.* and Hayat, S.* (2019) “Brassinosteroid Regulated Physiological Process: An Omics Perspective” Brassinosteroids: Plant Growth and Development, ed. By Shamsul Hayat, Dr. Mohammad Yusuf, Dr. Renu Bhardwaj & Dr. Andrzej Bajguz (Springer Nature, Singapore), pp. 297-322.
  3. Juan, H.-F. and Huang, H.-C. (2018) A Practical Guide to Cancer Systems Biology (World Scientific Publishing, Singapore)
  4. Juan, H.-F. (2017) “Data Sources for herbal and traditional medicines” in Computational Systems Pharmacology and Toxicology, Edited by Dale Johnson and Rudy J Richardson (The Royal Society of Chemistry, Cambridge, UK), pp. 243-260.
  5. Juan, H.-F. and Huang, H.-C. (2012) Systems Biology: Applications in cancer-related research (World Scientific Publishing, Singapore).
  6. Juan, H.-F. (2011) “Transcriptomics and proteomics study in regulation of brassinosteroids” in Brassinosteroids: A Class of Plant Hormone, ed. Shamsul Hayat and Aqil Ahmad (Springer, Netherlands), pp. 393-402.
  7. Juan, H.-F. and Huang, H.-C. (2007) “Bioinformatics: Microarray Data Clustering and Functional Classification” in Microarrays (2nd ed): Applications and Data Analysis, ed. Jang B. Rampal (The humana press inc.), pp. 405-416.
  8. 陳水田、曾銘仁、阮雪芬等 (2003) 基因體科學入門, 藝軒. [A Primer of Genome Science, Gibson, G. and Muse, S. V., Sinauer Associates Inc. (2001)]

科普文章

  1. 阮雪芬、黃宣誠 (2016). 解析複雜的生命現象—系統生物學. 科學月刊六月號558: 436-441 (封面故事)
  2. 鄞偈帆、高士傑、阮雪芬 (2015). 丹參的效用―從心血管疾病的治療到抗癌. 科技報導七月號403期 (焦點話題)
  3. 張心儀、黃翠琴、阮雪芬 (2009). 大腸桿菌與新能源開發. 科學月刊四月號472: 289-290 (封面故事)
  4. 林怡杏、連晃駿、章麗雲、華筱玲、徐明洸、郭文宏、阮雪芬、張金堅、謝豐舟 (2008). DNA微陣列晶片在乳癌診斷之最新發展. 當代醫學35: 453-459.
  5. 阮雪芬 (2005). 蛋白質體學的介紹. 化工52: 14-22.
  6. 阮雪芬、陳水田、朱延和 (2002). 王光燦院士–臺灣生物有機化學研究的先驅者。科學發展月刊 357: 60-65.
  7. 阮雪芬、陳益明 (1993). 植物抵抗疾病的免疫反應. 科學農業. 41: 49-53.

專利

  1. Li, W.-S., Wang, Y.-C., Juan, H.-F. “Certain Lithocholic acid analogues that inhibit sialytransferase” ROC I 369361, 2012/8/1-2026/7/5.
  2. Juan, H.-F., Mori, H., Chang, H.-Y., Huang, H.-C., Huang, T.-C., Liao, J.C., “Alcohols tolerant Escherichia coli and methods of production thereof” ROC I 379901, 2012/12/21-2028/10/28.
  3. Juan, H.-F., Chen, C.-N., Tseng, C.-W., Chang, K.-J. “Method for prognosis of gastric cancer” ROC I 399541, 2013/6/21-2029/5/26.
  4. Li, W.-S., Wang, Y.-C., Juan, H.-F. “Lithocholic acid analogues that inhibit sialyltransferase” US 08940719, 2015/1/27-2035/1/28.