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publication:juan [2019/11/25 08:00] 游文萱 [Journal Papers / 期刊論文] |
publication:juan [2020/12/24 14:11] 游文萱 [Conference Proceedings / 研討會論文] |
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===== Journal Papers / 期刊論文 ===== | ===== Journal Papers / 期刊論文 ===== | ||
- | - Lee, W.-H., Chen, K.-P., Wang, K., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Characterizing the cancer-associated microbiome with small RNA sequencing data" //Biochemical and Biophysical Research Communications// (Accepted). | + | |
- | - Chang, H.-C., Huang, H.-C., __**Juan, H.-F.**__*, Hsu, C.-L* (2019) "Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation" //BMC Genomics// (Accepted). | + | - Chen, T.-F., Chang, Y.-C., Hsiao, Y., Lee, K.-H., Hsiao, Y.-C., Lin, Y.-H., Tu, Y.-C. E., Huang, H.-C., Chen, C.-Y.* , __**Juan, H.-F.**__* (2020) "DockCoV2: a drug database against SARS-CoV-2" //Nucleic Acids Research// (in press). |
+ | - Chang, Y.-W., Hsu, C.-L., Tang, C.-W., Chen, X.-J., Huang, H.-C.*, __**Juan, H.-F.**__* (2020) "Multiomics reveals ectopic ATP synthase blockade induces cancer cell death via a lncRNA-mediated phospho-signaling network" //Molecular and Cellular Proteomics// (in press). | ||
+ | - Wu, A. Y.-T., Sun, Y.-C., Chen, Y.-J., Chou, S. T.-Y., Guo, V., Chien, J. C.-Y., Ko, J. J.-S., Yang, A. L., Huang, H.-C., Chuang, J.-C., Wu, S., Ho, M.-R., Ericsson, M., Lin, W.-W., Cheung, C. H. Y., __**Juan, H.-F.**__, Ueda, K., Chen Y., Lai C. P.-K. (2020) "Multi-resolution imaging using bioluminescence resonance energy transfer identifies distinct biodistribution profiles of extracellular vesicles and exomeres with redirected tropism" //Advanced Science// 7: 2001467. | ||
+ | - Cheung, H. Y. C., Hsu, C.-L., Lin, T.-Y., Chen, W.-T., Wang, Y.-C., Huang, H.-C.*, __**Juan, H.-F.**__* (2020) "ZNF322A-mediated protein phosphorylation induces autophagosome formation through modulation of IRS1-AKT glucose uptake and HSP-elicited UPR in lung cancer” //Journal of Biomedical Science// 27(1):75. | ||
+ | - Wang, W.-H., Hsu, C.-L., Huang, H.-C.*, __**Juan, H.-F.**__* (2020) "Quantitative phosphoproteomics reveals cell alignment and mitochondrial length change under cyclic stretching in lung cells" //International Journal of Molecular Sciences// 21(11):E4074. | ||
+ | - Yin, C.-F., Kao, S.-C., Hsu, C.-L., Cheung, C. H.Y., Chang, Y.-W., Huang, H.-C.*, __**Juan, H.-F.**__* (2020) "Phosphoproteome analysis reveals dynamic heat shock protein 27 phosphorylation in tanshinone IIA-induced cell death" //Journal of Proteome Research// 19(4):1620-1634. | ||
+ | - Lee, P.-C. Chen, S.-T., Kuo, T.-C., Lin, T.-C., Lin, M.-C., Huang, J., Hung, J.-S., Hsu, C.-L., __**Juan, H.-F.**__, Lee, P.-H., and Huang, M.-C. (2020) "C1GALT1 is associated with poor survival and promotes soluble Ephrin A1-mediated cell migration through activation of EPHA2 in gastric cancer" //Oncogene// 39(13):2724-2740. | ||
+ | - Lee, W.-H., Chen, K.-P., Wang, K., Huang, H.-C.*, __**Juan, H.-F.**__* (2020) "Characterizing the cancer-associated microbiome with small RNA sequencing data" //Biochemical and Biophysical Research Communications// 522:776-782. | ||
+ | - Chang, H.-C., Huang, H.-C., __**Juan, H.-F.**__*, Hsu, C.-L* (2019) "Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation" //BMC Genomics// 20(Suppl 10):896. | ||
- Hsieh, C.-H., Cheung, C. H. Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Quantitative proteomics of Th-MYCN transgenic mice reveals aurora kinase inhibitor altered metabolic pathways and enhanced ACADM to suppress neuroblastoma progression" //Journal of Proteome Research// 18(11):3850-3866. | - Hsieh, C.-H., Cheung, C. H. Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Quantitative proteomics of Th-MYCN transgenic mice reveals aurora kinase inhibitor altered metabolic pathways and enhanced ACADM to suppress neuroblastoma progression" //Journal of Proteome Research// 18(11):3850-3866. | ||
- Cheung, H. Y. C., Hsu, C.-L., Tsuei, C.-Y., Kuo, T.-T., Huang, C.-T., Hsu, W.-M., Chung, Y.-H., Wu, H.-Y., Hsu, C.-C., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy" //Cell Death & Disease// 10:786. | - Cheung, H. Y. C., Hsu, C.-L., Tsuei, C.-Y., Kuo, T.-T., Huang, C.-T., Hsu, W.-M., Chung, Y.-H., Wu, H.-Y., Hsu, C.-C., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy" //Cell Death & Disease// 10:786. | ||
- Wu, P.-Y., Yu, I-S., Lin, Y.-C., Chang, Y.-T., Chen, C.-C., Lin, K.-H., Tseng, T.-H., Kargren, M., Tai, Y.-L., Shen, T.-L., Liu, Y.-L., Wang, B.-J., Chang, C.-H., Chen, W.-M., __**Juan, H.-F.**__, Huang, S.-F., Chan, Y.-Y., Liao, Y.-F., Hsu, W.-M., Lee, H. (2019) "Activation of aryl hydrocarbon receptor by kynurenine impairs progression and metastasis of neuroblastoma" //Cancer Research// 79(21):5550-5562. | - Wu, P.-Y., Yu, I-S., Lin, Y.-C., Chang, Y.-T., Chen, C.-C., Lin, K.-H., Tseng, T.-H., Kargren, M., Tai, Y.-L., Shen, T.-L., Liu, Y.-L., Wang, B.-J., Chang, C.-H., Chen, W.-M., __**Juan, H.-F.**__, Huang, S.-F., Chan, Y.-Y., Liao, Y.-F., Hsu, W.-M., Lee, H. (2019) "Activation of aryl hydrocarbon receptor by kynurenine impairs progression and metastasis of neuroblastoma" //Cancer Research// 79(21):5550-5562. | ||
- | - Cheung, H. Y. C., Hsu, C.-L., Tsuei, C.-Y., Kuo, T.-T., Huang, C.-T., Hsu, W.-M., Chung, Y.-H., Wu, H.-Y., Hsu, C.-C., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy" //Cell Death and Disease// (Accepted). | ||
- | - Hsieh, C.-H., Cheung, C. H. Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Quantitative proteomics of Th-MYCN transgenic mice reveals aurora kinase inhibitor altered metabolic pathways and enhanced ACADM to suppress neuroblastoma progression" //Journal of Proteome Research// (Accepted). | ||
- | - Chang, H.-C., Huang, H.-C., __**Juan, H.-F.**__*, Hsu, C.-L* (2019) "Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation" //BMC Genomics// (Accepted). | ||
- | - Wu, P.-Y., Yu, I-S., Lin, Y.-C., Chang, Y.-T., Chen, C.-C., Lin, K.-H., Tseng, T.-H., Kargren, M., Tai, Y.-L., Shen, T.-L., Liu, Y.-L., Wang, B.-J., Chang, C.-H., Chen, W.-M., __**Juan, H.-F.**__, Huang, S.-F., Chan, Y.-Y., Liao, Y.-F., Hsu, W.-M., Lee, H. (2019) "Activation of aryl hydrocarbon receptor by kynurenine impairs progression and metastasis of neuroblastoma" //Cancer Research// (in press). | ||
- Huang, C.-T., Hsieh, C.-H., Lee, W.-C., Liu, Y.-L., Yang, T.-S., Hsu, W.-M., Oyang, Y.-J., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Therapeutic targeting of non-oncogene dependencies in high-risk neuroblastoma" //Clinical Cancer Research// 25(13):4063-4078. | - Huang, C.-T., Hsieh, C.-H., Lee, W.-C., Liu, Y.-L., Yang, T.-S., Hsu, W.-M., Oyang, Y.-J., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Therapeutic targeting of non-oncogene dependencies in high-risk neuroblastoma" //Clinical Cancer Research// 25(13):4063-4078. | ||
- Huang, C.-T., Hsieh, C.-H., Chung, Y.-H., Oyang, Y.-J., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Perturbational gene-expression signatures for combinatorial drug discovery" //iScience// 15:291-306 (**Cell Press**). | - Huang, C.-T., Hsieh, C.-H., Chung, Y.-H., Oyang, Y.-J., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) "Perturbational gene-expression signatures for combinatorial drug discovery" //iScience// 15:291-306 (**Cell Press**). | ||
- Yang, T.-W., Sahu, D., Chang, Y.-W., Hsu, C.-L., Hsieh, C.-H., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) “RNA-binding proteomics reveals MATR3 interacting with lncRNA SNHG1 to enhance neuroblastoma progression” //Journal of Proteome Research// 18: 406–416. | - Yang, T.-W., Sahu, D., Chang, Y.-W., Hsu, C.-L., Hsieh, C.-H., Huang, H.-C.*, __**Juan, H.-F.**__* (2019) “RNA-binding proteomics reveals MATR3 interacting with lncRNA SNHG1 to enhance neuroblastoma progression” //Journal of Proteome Research// 18: 406–416. | ||
- | - Chang, J.-Y., Yu, W.-H., __**Juan, H.-F.**__*, Huang, H.-C.* (2018) "Dynamics of alternative polyadenylation in human preimplantation embryos" //Biochemical and Biophysical Research// Sep 11. pii: S0006-291X(18)31946-6. | + | - Chang, J.-Y., Yu, W.-H., __**Juan, H.-F.**__*, Huang, H.-C.* (2018) "Dynamics of alternative polyadenylation in human preimplantation embryos" //Biochemical and Biophysical Research Communications// 504(4):727-733. |
- Huang, C.-T., Hsieh, C.-H., Oyang, Y.-J., Huang, H.-C.*, __**Juan, H.-F.**__* (2018) "A large-scale gene expression intensity-based similarity metric for drug repositioning" //iScience// 7: 40-52. (Cell Press) | - Huang, C.-T., Hsieh, C.-H., Oyang, Y.-J., Huang, H.-C.*, __**Juan, H.-F.**__* (2018) "A large-scale gene expression intensity-based similarity metric for drug repositioning" //iScience// 7: 40-52. (Cell Press) | ||
- Lin, M.-C., Chien, P.-H., Wu, H.-Y., Chen, S.-T., __**Juan, H.-F.**__, Lou, P.-J.*, Huang, M.-C. (2018) "C1GALT1 predicts poor prognosis and is a potential therapeutic target in head and neck cancer" //Oncogene// Jun 21. doi: 10.1038/s41388-018-0375-0. | - Lin, M.-C., Chien, P.-H., Wu, H.-Y., Chen, S.-T., __**Juan, H.-F.**__, Lou, P.-J.*, Huang, M.-C. (2018) "C1GALT1 predicts poor prognosis and is a potential therapeutic target in head and neck cancer" //Oncogene// Jun 21. doi: 10.1038/s41388-018-0375-0. | ||
- Sahu, D., Ho, S.-Y., __**Juan, H.-F.**__*, Huang, H.-C.* (2018) "High-risk, expression-based prognostic long noncoding RNA signature in neuroblastoma" //JNCI Cancer Spectrum// 2(2): pky015. | - Sahu, D., Ho, S.-Y., __**Juan, H.-F.**__*, Huang, H.-C.* (2018) "High-risk, expression-based prognostic long noncoding RNA signature in neuroblastoma" //JNCI Cancer Spectrum// 2(2): pky015. | ||
- | - Cheng, A.-N., Fan, C.-C., Lo, Y.-K., Kuo, C.-L., Wang, H.-C., Lien, I-H., Lin, S.-Y., Chen, C.-H., Jiang, S. S., Chang, I-S., __**Juan, H.-F.**__, Lyu, P.-C., Lee, A Y.-L.* "Cdc7-Dbf4-mediated phosphorylation of HSP90-S164 stabilizes HSP90-HCLK2-MRN complex to enhance ATR/ATM signaling that overcomes replication stress in cancer" //Scientific Reports// 7: 17024. | + | - Cheng, A.-N., Fan, C.-C., Lo, Y.-K., Kuo, C.-L., Wang, H.-C., Lien, I-H., Lin, S.-Y., Chen, C.-H., Jiang, S. S., Chang, I-S., __**Juan, H.-F.**__, Lyu, P.-C., Lee, A Y.-L.* (2017) "Cdc7-Dbf4-mediated phosphorylation of HSP90-S164 stabilizes HSP90-HCLK2-MRN complex to enhance ATR/ATM signaling that overcomes replication stress in cancer" //Scientific Reports// 7: 17024. |
- Cheung, H. Y. C., Hsu, C.-L., Chen, K.-P., Chong, S.-T., Huang, H.-C.*, __**Juan, H.-F.**__* (2017) "MCM2-regulated functional networks in lung cancer by multi-dimensional proteomic approach" //Scientific Reports// 7(1):13302. | - Cheung, H. Y. C., Hsu, C.-L., Chen, K.-P., Chong, S.-T., Huang, H.-C.*, __**Juan, H.-F.**__* (2017) "MCM2-regulated functional networks in lung cancer by multi-dimensional proteomic approach" //Scientific Reports// 7(1):13302. | ||
- Hsu, C.-L., Wang, J.-K., Lu, P.-C., Huang, H.-C.*, and __**Juan, H.-F.**__* (2017) "DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics" //Bioinformatics// 33(22):3664-3666. | - Hsu, C.-L., Wang, J.-K., Lu, P.-C., Huang, H.-C.*, and __**Juan, H.-F.**__* (2017) "DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics" //Bioinformatics// 33(22):3664-3666. | ||
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- __**Juan, H.-F.**__, Hung, C.-C., Wang, K.-T., Chiou, S.-H.* (1999) “Comparison of three classes of snake neurotoxins by homology modeling and computer simulation graphics.” Biochem Biophys Res Commun. 257: 500-510. | - __**Juan, H.-F.**__, Hung, C.-C., Wang, K.-T., Chiou, S.-H.* (1999) “Comparison of three classes of snake neurotoxins by homology modeling and computer simulation graphics.” Biochem Biophys Res Commun. 257: 500-510. | ||
===== Conference Proceedings / 研討會論文 ===== | ===== Conference Proceedings / 研討會論文 ===== | ||
+ | - Chang, Y.-W., Yang, T. T., Chen, M.-C., Liaw, Y-g., Yin, C.-F., Huang, T.-Y., Hou, J.-T., Hung, Y.-H., Hsu, C.-L., Huang, H.-C. *, __**Juan, H.-F.**__* "Mitochondrial ATP Synthase Trafficking along Microtubules to the Cell Surface Depends on KIF5B and DRP1" 2020 Annual Meeting of Taiwan Society for Mitochondrial Research and Medicine, Hualien, Taiwan, Nov. 14-15, 2020. (**Honorable Award**) | ||
+ | - Hsieh, C.-H., Huang, C.-T., Cheng, Y.-S., Chung, Y.-H., Liu, Y.-L., Hsu, C.-H., Hsu, W.-M., Huang, H.-C.*, __**Juan, H.-F.**__* "Identification of a new phosphoglycerate dehydrogenase inhibitor to reprogram serine/glycine metabolism for neuroblastoma therapy" 2020 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Taina, Taiwan, Oct. 30- Nov. 1, 2020. (**Excellent Poster Award**) | ||
+ | - Wang, W.-H., Tsai, H.-H., Hsieh, C.-H., Huang, C.-T., Cheung, C. H. Y., Huang, H.-C., __**Juan, H.-F.**__* "Mitochondrial Division Inhibitor 1 induced serine biosynthesis via regulation of PSMA3-S250 in neuroblastoma" 2020 The Taiwan Society for Biochemistry and Molecular Autumn Camp, Taina, Taiwan, Oct. 30- Nov. 1, 2020. | ||
+ | - Chang, H.-C., Huang, H.-C., __**Juan, H.-F.**__*, Hsu, C.-L* (2019) "Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation" //Joint 30th International Conference on Genome Informatics& Australasian Bioinformatics and Computational Biology Society (GIW/ABACBS 2019)//, Sydney, Australia, Dec. 9-11, 2019. (**Oral Presentation**) | ||
+ | - Cheung, C.H.Y., Hsu, C.-L., Lin, T.-Y., Chen, W.-T., Wang, Y.-C., Huang, H.-C.*, and __**Juan, H.-F.**__* "Quantitative Proteomics and Phosphoproteomics Analyses Reveal the Regulatory Roles of ZNF322A in lung cancer" //2019 Multiomics and precision medicine joint conference//, Tainan, Taiwan, Dec. 07-08, 2019. (**Young scientist oral presentation competition - 2nd place**) | ||
+ | - Lee, W.-H., Chen, K.-P., Wang, K., Huang, H.-C.*, and __**Juan, H.-F.**__* "Characterizing the cancer-associated microbiome with small RNA sequencing data" //2019 Multiomics and precision medicine joint conference//, Tainan, Taiwan, Dec. 07-08, 2019. (**Poster Award**) | ||
+ | - Hsieh, C.-H., Cheung, C.H.-Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C*. and __**Juan, H.-F.**__* "Quantitative Proteomics of Th-MYCN Transgenic Mice Reveals Aurora Kinase Inhibitor Altered Metabolic Pathways and Enhanced ACADM To Suppress Neuroblastoma Progression" //2019 Multiomics and precision medicine joint conference//, Tainan, Taiwan, Dec. 07-08, 2019. (**Poster Award**) | ||
+ | - Kao, Y.-C., Chang, N.-W., Lai, C.P., Huang, H.-C.*, and __**Juan, H.-F.**__* " The role of ectopic ATP synthase in cell-to-cell communication by extracellular vesicles" //2019 The Taiwan Society for Biochemistry and Molecular Autumn Camp//, New Taipei City, Taiwan, Nov. 15-17, 2019. | ||
+ | - Chang, Y.-W., Hou, J.-T., Liaw, Y-g., Huang, T.-Y., Chen, M.-C., Yin, C.-F., Hung, Y.-H., Hsu, C.-L., Huang, H.-C.*, and __**Juan, H.-F.**__* "Mitochondrial ATP synthase trafficking toward the cell surface depending on KIF5B and Drp1 to serve as a new target for overcoming chemoresistance" //2019 Annual Meeting of Taiwan Society for Mitochondrial Research and Medicine//, Taipei, Taiwan, Nov. 09, 2019. (**Honorable Award**) | ||
+ | - Wang, W. H., Hsu, C. L., Huang, H.-C.*, and __**Juan, H.-F.**__* "Cyclic stretch-induced biological functions by phosphoproteomics profiling" //2019 Annual Meeting of Taiwan Society for Mitochondrial Research and Medicine//, Taipei, Taiwan, Nov. 09, 2019. (**Honorable Award**) | ||
+ | - __**Juan, H.-F.**__* and Huang, H.-C.* "Targeting Trafficking of Mitochondrial Key Energy Protein for Cancer Therapy" //16th conference of The Asian Society for Mitochondrial Research and Medicine (ASMRM2019)//, Fukuoka city, Japan, Oct. 3-5, 2019 (**E-poster**) | ||
+ | - Huang, C.-T., Hsieh, C.-H., Lee, W.-C., Liu, Y.-L., Yang, T.-S., Hsu, W.-M., Oyang, Y.-J., Huang, H.-C.* and __**Juan, H.-F.**__* "Therapeutic targeting of non-oncogene dependencies in high-risk neuroblastoma " //The 78th Annual Meeting of the Japanese Cancer Association//, Kyoto, Japan, Sep. 26-28, 2019. (**Travel Grant Award**) | ||
+ | - Hsieh, C.-H., Cheung, C. H. Y., Liu, Y.-L., Hou, C.-L., Hsu, C.-L., Huang, C.-T., Yang, T.-S., Chen, S.-F., Chen, C.-N., Hsu, W.-M.*, Huang, H.-C.* and __**Juan, H.-F.**__* "Targeting aurora kinases reduces neuroblastoma progression by altering the metabolic pathways via enhancing ACADM" //The 78th Annual Meeting of the Japanese Cancer Association//, Kyoto, Japan, Sep. 26-28, 2019. (**Travel Grant Award**) | ||
- Kao, Y.-C., Chang, N.-W., Chang, Y.-W., Lai, C. P., Huang, H.-C. and __**Juan, H.-F.**__* "Ectopic ATP synthase induces extracellular vesicle release for cell-to-cell communications" The 8th Congress of the International Society for Extracellular Vesicles (ISEV2019), Kyoto, Japan, April 24-28, 2019. | - Kao, Y.-C., Chang, N.-W., Chang, Y.-W., Lai, C. P., Huang, H.-C. and __**Juan, H.-F.**__* "Ectopic ATP synthase induces extracellular vesicle release for cell-to-cell communications" The 8th Congress of the International Society for Extracellular Vesicles (ISEV2019), Kyoto, Japan, April 24-28, 2019. | ||
- Wang, C.-C., Chang, Y.-W., Wu, C.-H., Cheung, C. H. Y., Lee, J.-L., Huang, H.-C.* and __**Juan, H.-F.**__* "Mesenchymal stem cells-derived microenvironment promote lung cancer cell progression via c-Fos S374 phosphorylation in MAPK signaling pathway" //34th Joint Annual Conference of Biomedical Sciences//, Taipei, Taiwan, March 23-24, 2019. (**Best Poster Award**) | - Wang, C.-C., Chang, Y.-W., Wu, C.-H., Cheung, C. H. Y., Lee, J.-L., Huang, H.-C.* and __**Juan, H.-F.**__* "Mesenchymal stem cells-derived microenvironment promote lung cancer cell progression via c-Fos S374 phosphorylation in MAPK signaling pathway" //34th Joint Annual Conference of Biomedical Sciences//, Taipei, Taiwan, March 23-24, 2019. (**Best Poster Award**) |